BtaEX6109902 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037397 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr25:27494380-27495386:-
Coord C1 exon
chr25:27495130-27495386
Coord A exon
chr25:27494880-27495043
Coord C2 exon
chr25:27494380-27494617
Length
164 bp
Sequences
Splice sites
3' ss Seq
TCCCTCCCTTTCTCTCGCAGAAC
3' ss Score
13.01
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
TCACATCAGCTCAGCGCGCCCGCCCAGCGACCTGGACTACTGGCGCGTGCAACTGCCCTCGCGCCCGCGCGCGGAGCAGGTGGCGCGCCTCGTGCCGCACGAGAACGCCTCGTGGGACGACGCCTCGAACCTGGCGCTGCTGCAGCTGCGTGCGCCCGTGAACCTGAGCGCGGCCCCGCGGCCAGTGTGTCTACCCCACCCAGAACACTATTTCCTGCCAGGGAGCCGCTGCCGCCTGGCTCGCTGGGGCCGCGGGG
Seq A exon
AACCCGCGCCCGGAGCCAGCTCGCTGCTTGAGGCGGAGCTGTTGAGCGCCTGGTGGTGTCACTGCCTGTACGGCCGCCAGGGGGCGTCAGTGCCGCCGCCAGGAGAGCCTCCGCAGGCGCTCTGCCCCGCCTACCAGGAGGAGGAGGCGGAGGGGAGCTGCTGG
Seq C2 exon
AACTACTCTCATTGGAGCCTGCTGTGCCGGGAAGAGGGGACCTGGTTCTTGGCTGGAATCAGAGACTTGCCCAGTGACTGCCTGCGTCCCAGAGTTTTCTACCCACTGCAGACCCACGGTCCATGGATCAGCCATGTGACTCGGGGGGCCTACCTGGAGGATCAGCTGGCCTGGGACTGGGGACCTGAGGGGGAGGAGACTGAGGCACAAACCTGTCCCCCTCACACAGAGAATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037397-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.200 C2=0.225
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(59.3=100)
A:
PF0008921=Trypsin=PD(10.3=27.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTCTACCCCACCCAGAA
R:
CCAGCTGATCCTCCAGGTAGG
Band lengths:
242-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]