HsaEX6043369 @ hg38
Exon Skipping
Gene
ENSG00000178226 | PRSS36
Description
protease, serine 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr16:31141723-31142993:-
Coord C1 exon
chr16:31142737-31142993
Coord A exon
chr16:31142481-31142644
Coord C2 exon
chr16:31141723-31141960
Length
164 bp
Sequences
Splice sites
3' ss Seq
CCCTGCCTTTTCCCTTCCAGAAC
3' ss Score
12.82
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
CCCGAACAGCTCCGACAGCCCACCCCGCGACCTCGACGCCTGGCGCGTGCTGCTGCCCTCGCGCCCGCGCGCGGAGCGGGTGGCGCGCCTGGTGCAGCACGAGAACGCTTCGTGGGACAACGCCTCGGACCTGGCGCTGCTGCAGCTGCGCACGCCCGTGAACCTGAGCGCGGCTTCGCGGCCCGTGTGCCTACCCCACCCGGAACACTACTTCCTGCCCGGGAGCCGCTGCCGCCTGGCCCGCTGGGGCCGCGGGG
Seq A exon
AACCCGCGCTTGGCCCAGGCGCGCTGCTGGAGGCGGAGCTGTTAGGCGGCTGGTGGTGCCACTGCCTGTACGGCCGCCAGGGGGCGGCAGTACCGCTGCCCGGAGACCCGCCGCACGCGCTCTGCCCTGCCTACCAGGAAAAGGAGGAGGTGGGCAGCTGCTGG
Seq C2 exon
AATGACTCGCGTTGGAGCCTTTTGTGCCAGGAGGAGGGGACCTGGTTTCTGGCTGGAATCAGAGACTTTCCCAGTGGCTGTCTACGTCCCCGAGCCTTCTTCCCTCTGCAGACTCATGGCCCATGGATCAGCCATGTGACTCGGGGAGCCTACCTGGAGGACCAGCTAGCCTGGGATTGGGGCCCTGATGGGGAGGAGACTGAGACACAGACTTGTCCCCCACACACAGAGCATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226-'13-17,'13-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=0.011 C2=0.158
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.7=100)
A:
PF0008921=Trypsin=FE(24.3=100)
C2:
PF0008921=Trypsin=PD(16.7=46.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACGCTTCGTGGGACAAC
R:
CGTAGACAGCCACTGGGAAAG
Band lengths:
243-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains