BtaEX6110822 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039512 | ZSCAN25
Description
zinc finger and SCAN domain containing 25 [Source:HGNC Symbol;Acc:HGNC:21961]
Coordinates
chr25:37347031-37349581:-
Coord C1 exon
chr25:37349168-37349581
Coord A exon
chr25:37347725-37347926
Coord C2 exon
chr25:37347031-37347122
Length
202 bp
Sequences
Splice sites
3' ss Seq
GTGTTGGGGACTCTTCTTAGGTT
3' ss Score
5.88
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
TTCAGTCTTTTGGGAGGTGGTGTGAAGATGCTTGTAGAGCGTCCAGGGATGGCAGAAGAGCCTCAGCAGCAAATGGGTGGCCATGTGGTAAAACTAGAGAAAGAGCTGCCGTGGGGCAGGACGAGGGAGGACCCCAGCCCGGAGACTTTTCGCCTGCGGTTTCGGCAGTTCCGCTACCAGGAGGCGGCCGGGCCTCAGGAAGCCCTCAGGGAGCTCCAGGAGCTCTGTCGCCAGTGGCTGCGGCCCGAGCTGCATACCAAGGAGCAGATCCTGGAGCTGCTAGTGCTGGAGCAGTTCCTGACCATCCTGCCACGGGAGTTCTACGCCTGGATTTGGGAGCACGGCCCCGAGAGCGGCAAGGCCCTAGTGGCCATGGTGGAGGACTTCACGCAGAGAGCCCTGGAAGCCAAGGCG
Seq A exon
GTTCCGTGCCACGTGCAGGGACAGCGGGAGGAGACAACGCTTTGCAGAGACCCCTGGGAACCAAGTGTCCACCTGGGGCCCGTGGAGGTCAAGCCCGAGTGGGGGATGCCCCATGGGGAAGGCATCCAAGACCTTGACCGAGGCACTGAGGAGCAGCTCAGCCAGGACCCTGGAGAGGGGATGCAGGCCTTCCAGGAGCAGG
Seq C2 exon
CTCTGCCAGTCCTTCAGGCTGGTGCTGGCCTCCCTGCAGTGAGCACCAGAGACCAGGAGGTGGCAGCCAGCTTCCTGACGGCTGGATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039512-'3-5,'3-4,6-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=0.735 C2=0.774
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=72.1)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTTTCGCCTGCGGTTTC
R:
AGCACCAGCCTGAAGGACTG
Band lengths:
298-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]