RnoEX0102300 @ rn6
Exon Skipping
Gene
ENSRNOG00000042213 | Zscan25
Description
zinc finger and SCAN domain containing 25 [Source:RGD Symbol;Acc:1308619]
Coordinates
chr12:11779506-11780583:-
Coord C1 exon
chr12:11780483-11780583
Coord A exon
chr12:11779917-11779980
Coord C2 exon
chr12:11779506-11779606
Length
64 bp
Sequences
Splice sites
3' ss Seq
ATGGGATTCATTCTTCTTAGGTT
3' ss Score
6.07
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
TTTTATTTTGGGCGTCTATAACTGTGAAGTTGATTTCCAACAGTGAGTCTTGTGCCTAGAGTTCTCAGCAGGACCTGCTCACTGGACCTGGAGATGCCAAG
Seq A exon
GTTCCATGCCATGCCCAGGGAGAACAGCTGGTCACAGCCCTGGGCGGAGGATCTTGGCAATCAG
Seq C2 exon
TTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042213-'5-4,'5-3,6-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.476 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PD(1.1=1.5)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACAGTGAGTCTTGTGCCT
R:
CTTACCTAGGAAGCGCAAGGC
Band lengths:
144-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]