BtaINT0000076 @ bosTau6
Intron Retention
Description
Bos taurus cytochrome P450, family 2, subfamily J (LOC521656), mRNA. [Source:RefSeq mRNA;Acc:NM_001038551]
Coordinates
chr3:86507884-86514497:+
Coord C1 exon
chr3:86507884-86508071
Coord A exon
chr3:86508072-86514358
Coord C2 exon
chr3:86514359-86514497
Length
6287 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
GTCTCTTCTGCCTTCTCCAGGGC
3' ss Score
11.26
Exon sequences
Seq C1 exon
AAAAAGTCCAAGCTGAGATCGACAGGGTGCTCGGGCAATCACAGAAGGTGAGCACGGCCTCTCGAGAGTCCATGCCCTACACCAACGCTGTCATCCACGAGGTGCAGAGAATGGGGAACATCGTCCCCATGAACGTGCCCAGGGAGGTGACAGTGGACACCGTCCTGGCTGGATACCACCTGGTCAAG
Seq A exon
GTAATTAGAGGCTCACTCACAGCCTCAGATCTCCAAGCTTATATTTTAAATGGTGTGAATCTCAACTGAAAAGTGACATGTTTTCTTCTCTTAGAGAAACACTTATGGGGAGAGGTATTTTTGCTGGTGGAATACTAGATTTTTTCTTTCATTTGGGATCTTTACAAGATTAGTTCAAATATATGTTAATAGGTGTTCTGGAGGGGAAGGGGGACTCCTAGGTCAAATGTGTTTATATGAAGACTGACTTTTCTTTGCTACGAGATTGCTCAGTGTTCTTACTCTATGATTGTGAATATCTCTGGGGATATAGCTGCAGCAATTCTCAGTCAGACTTTGCTAAGAGATCCTTTTGTTTGCCTTGGGAGAGCTTCTCACAGGATAGGGACCTGCCAGACTTATGTTGGAAAATTCTGCTTCTTAATCCTGGGGGCAGAAAATGTTGACTTATGAGGGACATGTGGGACCACTTGAACCAAAATCACATTAGTACTGCTGTTTCTAACATAACATCCCCACAGGTATTGTTTCCAGCGTTAACTTACAGCCCCTTGATGGGACTACCTCAAAAGGGAAAAGAATCCAAGCCTGTGCACTATTAAATAACAGAAAAGAGGAGAAGGAAACCAATACTTCCTTGGTTCCTAAAGCAGTCAGGACTCTATAGATTCTTTCAAAATGTCTGATTCAGTCCTCAGAATAATTCTGCTATCCTCATTTTACAAATTTGAAATCCAGGCTCAGAGAGTGATTAATCTTGTTTAAGAATTCTCAGTTACAGAGTAACAAGAGTTGGGTTCCAGAAACAGACTTGTTCTGAGTTCCAGGCTCATCTTTGTTGTCTACACCATGTTCTCTTTATAAGAGTTGCTCTACTTTGACTTTAGAAGAGTCTCCCTGCAATTGTTCTCAGTGGTTCTCTGTTAAATTCCCTGCGTTCACAGAGGAAATTCTGCTCTCTCTGCCCTGCTCTCTTAGGATCTCAGCAGACAGCTCTGCTGTGCCCCCTAGTGCCCTCTCTTTACACTGCACATTCACAGTCTGCTTTCTCACCACCTTGGTCCATCTCTGTGGATGCATTGCAGTTGGCCTGAGTCCCTCTGTATGTGGAACCTGGGGTTGATCTCAAGGGAAAAACACAGGAGCATCTCCCGTGGGCTCCCCATGGTCTCTGTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAGATTCATTCCAACAGATTTTTTCTGATGTAATGTTCTATGAGACCTAGCGAACCAACTAAATCTGATTTTTATTTTATTTCATTTATTTTAATTTGAAGACAATTACTTTACAATATTGTGGTGGTTTTTGCCATACATCAACATGAATCAGCCACAGGTGCACATGTGTCACCCTATGCTGAACCCCCCTCCCACCTCCTTCCCCACCCCATCCCTCAGGGTTGTCCCAGGGCACCAGCTTTGAGTGTCCTGCTTCATGCATCGAACTTGCACTGGTCATGTGTTTTACGTATGGTAATATACATGTTTCAATGCTATTCTCTCAAATCATCCCACCTTCACCTTTCCCACTGAGTCCAATAATCTGTTCTTTATGTCTGTGTCTCTTTTGCTGCCTTGCATATAGGATCATCATTACCGTCTTTCTAAATTTCATATATATGTATTAATATACTGTGTTGGTGTTTCTCTTTCTGACTTACTTCACTTTGTATAATAGGCTCCAGTTCTATCCACCTCATTAGAACTGACTCAAATGTGTTCTTCTTTATAGCTGAGAAATAGTCCATCGTGTATGTACCACAACTTTCTTATCCATTCATCTGCCAATGGGCATCTAGGCTGCTTCCATGTCCTACCTATGTCAACAGTGCTGCAGTGAACATTGGAGTAAATGTGTCTCTTTAATTCTGGTTCCCTCTGTGTGTATGCCCAGCTGTGGAATTGCTGGGTCATATGGCAGAATGGAACTGGAGGAATCAACTTTTCTGACTTCAGCCTATACTACCAAGCTACAGTCATCAAGACAGTATGGTACTGGCCAAAGACAGAAGTACAGATCAATGGAACAAAATAAAAAGCCCAGGGATAAATCCATGGAACCCTTATCTTTGAGAAGGTGAAACTATACAATGGAGAAAAGACTATCTCTTTAACAGGTGGTGCTGGGAAAACTGGCCAACCACCTGTAAAAGAATGAAACTAGAACACTTTCTAACACCACACAGAAAAATAAACTCAAAATTAATTAAAGATCTAAATGTAAGACCAGAAACTATAAAACTCTTAGAGGAAAACATAAGCAGAACACTCTCTGACATAAATCACAGCAAGATCCTCTATGACCCACTTCCCAGAGTAATAAATAAAAATAAAAATAAACAAATGGGACCTAACTAAACTTAAAAGCTTTTCCACAATGAAGGAAACTATAAGCAAGGTTGATAAGGCAGCCTTCAGAATGGGGGGAAATAATAGCAAATGAAACAACTGACAAAGAACTAGTCTCCAAAATATACAAGCAGCTCATGTAGCTCAATACCAGAGAAACAAACAACTCAATCAAAAAGGGGGCCAAAGAACTAAACAGACATTTCTCCAAAGAAGACATGAAAGTGAAAGTGAAAGTGAATTCGCTCAGTCATGTCCGACTCTTTGCAACCCTGTGGACTGTAGCCCACCACGCTTCTCTGTCCATGAGATTTTCCAGGCAAGAGTACTGGAGTGGGTTGCCATTTCCTTCTCCAGAAGATCTTCCTGACCCAGGGATCGAACCCAAGTCTCATACAGATGGCTAATAAACACATGAAAAGATGCTCAACATCACTCATTTTTAGAGAAATGCAAATCAAAACCACAGTGAGGTATCATCTCACACGGGTCAGAATGGCCACCATTAAAGTCTATAAACAATAAATGCTGGAGAGGGTGTGGAGACAAGGGAACCCTCTTACACTGGTACAGTCACTATGCAGAAGTGTGGGGATTCCTTACACTGACTTTTAGTAGCGACTAAAGTCCCCCTGGAGGATGTCATGTGCAGTGCTTCTCTGTAAGCCCCGGCATGGGAGCTCTGAAGTCCTGGCTGCCAGGGTCAGGATGCGTCCCTCTATTAGCAAGGGAAAACTGACTGAAAGCAAAAGAAAAGAAGATGAGGTAATGGATCCTTGGCCAAGGATCCTTGGCCAAGGATACATAATGAAAGCGATCCTCAAATTGTGTAAGATTTAGGTCCCACAAAGCTGGCCTGGTTGATTCGTTCAAGATGATGCAACAGAAGGACACCAGCTTAACTCTTCTTATGTAAACACAAAAATCACAATTATCTACTGGGTGCTCAGTCGCTCAGTCATGTCCGACTCTTTAAGATCCCATGGACTGTACCCTACTAGGCTTTTCTGTCCATGGGATTTTCTAGGCAAGATTACTGGAGTGGATTGCCATTTCCTTCTCCAGGGATCTGCTGAATAACCATTAACAAAACTGCTAAAACTTGTCTAAAAAAGACACCCTAATTCCAGTTTTTTAAGGAATCTCCACACTGTTCTCCATAGTGGCTGTACTAGTTTGCATTCCCACCAACAGTGTAAGGGGGTTCCCTTTTCTCCACACCCTCTCCAGCATTTATTGCCTGTAGACTTTTGGATCACAGCCATTCTCACTGGCGTGAAATGGTACCTCATTGTGGTTTTGATTTGCATTTCCCTGATAATGAGTGATGTTGAACATCTTTTCATGTGTTCGGATAAGAAAGCTGTGGTACATATATATAATGGAGTATTACTCAGCCATTAAAAAGAATACATTTGAATCAGTTCTAATGAGGTGGATGACTCTGGAGCCTATTATACAGAGTGAAGTAAGCCAGAAAGAAAAACACCAATAGAGTATACTAACACATATATATGGAATTTAGAAAGATGGTAACGATAACCTGTATGCGAGACAGCAAAAGAGACAAAGATGTATAGAACAGTCTTTCAGACTCTGTGGGAGAGGGCGAGGGTGGGATGATTTGGGAGAATGGCATTGAAACATGTATATTATCATATGTGAAACAAATGTCAGTCCAGGTTTGATGCAGGATACAGGGTGCTCAGGGCTGGTGCACTGGGAAGACCCAGAGGGATGGTACGGGGAGGGAGGTGGGAAGGGAGTTCAGGATGGGGGACACATGTGCACCCGTGGCGGATTCATTCCAATGTATGGCAAAACCACTACAATATCATAAAGTAATTAGCCTCCAATTAAAATAAATAAATTTATATATTTAAAAAAAGACACCCTAAATAGATAGCCAGTGGGAATTTGCCATATGACTCAAGGAGCTCAAACTGGTGCTCTATAACAACACAGAGGGGTAGGATGGGGTGGGAGGGAGGATCAAGAGGGCAGGGACGTATGTATACTATAGTTGATACATGTTGAGGTATGGCAGAAACCCAACACAATATTGTAAAGCAATTATCCTTAAATTAAAAATAAATAAAAATTTTTAAAGATACCTTAAATCCAAAGACAAAGAAGAAGCCACCACAAGATATCAGGAGGGGTAGAACTGCAACAAAATCAGCTCCCATACCCACCAGATGCTGTGCTTAATCACTTAGTCATGTTCACTCTTTGTGGACATGTAACCATGTAACCAAGGACTGTAACCCACCAGGCACCTCTGTCCATGGGGATTCTCCAGGCAAGAATACTGGAGTGGGCTCCCATTCCCTCCTCCAGGGGATCTTTCCAATCCAGGGATCAAACCCAGGTCTCCCACATTGCAGGTGGATTCTTTACAGTCTGAGCCACCAGGGAAGCCTACTTGCCAGGTGGGCAACCTGCCAACTGGAAAACAATTATACTACAGAAGTTCTGCCACAGTAGTGAAAATCCTGAGCCCCAAGGCAGGCATCCCAGCCTAGGGGTCTGGTAACAGGAGGAGGAGCCCCCAGAGAATGTAGCTATGAAGATGAGCAGATTGTGATCTCAGGAATTCCACAGGGCTGGATGGAAAAAGGACAGTCTTGGAGGGCACACACAAGACTGTGGACTGTGTGCACACGAGCACACAGGCAAATAAAGCAGTGACCTCGTAAGAGGCTGGACCAGACCTACTGCTAGTATTGGAGGGTCACCTGCAGAGGCAGGGGGCAGCACAGCTCACAGCAGGGACAAAGACACTCAGAGCAGCAGCTCCAGCAGATACTCATTGGCATGAGGATGCCCAGAGGTTGCCATACAAAGAGTCCTGGAAAATATTGGGAACAAATGACAAATTGAGAAACTGAAAGAGACTTGATGTAGTAAGCACGCAGGGAGAAGGATGGTGACTCAGGATGGGCAGGTGACGTGCCCATAACCTAAGAGAGATGGAAGCCATTGAGGGGTATCTATCGAGGTCCAAATATGGTGGGCGGATAGAAGTGACATAATTAAATCATGTCCAAAGCTATCTCAGCTTTCAATGTGTCCAGCACATTGAAGGGGAAAGAAAGGATATGGATGTAGTTAGGACTAGTGTAGGAGTGTGGGAAACCAAGGTAGTAACTTGGACCAGGCAGTGATGGATCTGAAATGGAGGTGACAGAATCCAGAGAAAACTCAAGTCAAGTTGAGCAGCCCAGCGAAGGCCTGGACGAAGGCAGAATGAGGGAAAGGGGGGCGTTAAGGAGGACTCCTGAGTTTGTTGCTGCATACCAGGAAGAATAGTGGTTTCTTCCACTTGGTGACCTTATTCTATTATTAAACTTTCTGTGGACTTTACTAGATAATGGAGGGAAGAGAATGTGAGAACCGTAGGCAAATGAGACATTTTTCATGTTGGACAAACTGCCATAGTTACCACTTGAGTAAGCAGCTGGGTCAGTCTCGGTCTAGAACTGCCTGCCCACTGTCACAATATTCATATATGTTTCATATGTGTTCACTGATGCATATGTGTTCCCTCCCAAGTTCTACACTGACAAGTCCCTGCAGAGATCCATTCTGCACTAAGAGCAGTCACACTTCCCTGACAAATTCCCAGCAGACAATTCCAGTCCGTCACTGTAAGCTGTCCCAAGGCAAAAAAAAAACAGTGCTAGGGATTGGGCTCAGAAGGTGGTGGGTTGGTGAGGCCGAGGGAGTTCAGGGTGCTGTCAGCCCAGGTGTGGGAGCGCCAGAGGACCGCCGCCCGTCTGTACATGTATGTTGTGTGGGTCAAGTCTTGCCTGAGTCTCTTCTGCCTTCTCCAG
Seq C2 exon
GGCACCATGGTGCTGACCAACCTGACTGCACTGCACAGGGACCCCGCAGAGTGGGCCACCCCTGACACGTTCAATCCAGAGCATTTTCTGGAAAATGGACAGTTTAAGAAAAGGGAATCCTTTCTGCCTTTCTCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000258:ENSBTAT00000013230:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.085
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]