BtaINT0000266 @ bosTau6
Intron Retention
Description
Bos taurus sterile alpha motif and leucine zipper containing kinase AZK (ZAK), mRNA. [Source:RefSeq mRNA;Acc:NM_001205493]
Coordinates
chr2:23475916-23477740:-
Coord C1 exon
chr2:23477696-23477740
Coord A exon
chr2:23475947-23477695
Coord C2 exon
chr2:23475916-23475946
Length
1749 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
GTGTGTCTTCTCTTCCACAGTAT
3' ss Score
10.05
Exon sequences
Seq C1 exon
CTGCTGCCTTCCTTTGAGATTGGTGCTTGGACAGAAGATGACGTG
Seq A exon
GTAAGCTGCTTCTGTTAATGCCTCCTTCAACCTGTGCAGGGAGTTCATGACTAGGTCCGCAAGTTAAAAATGCAGGTAGAGGGGTCTGGGCCTTAGGAAAGTCTAAGTAGGAGAAGTTGACAAATTCCATGTTTTTCTATTTTTAAGGCAGTAGTGATTTAAAGTAAGGCCTCGAGCAAAGCAAGTATCTCATCAAATCTTACAAGAGGATTCCACCTCCCTATTTGCTCTGAAAGGTATTCCAGAATGCAGTAATGAATCCCAGTTAAAGGGGCTTCCCAGGATACCAAAGGAACATACCAGGAAAAAAAGTGATCTTAAGTTTTCCCAGAAGATCAGGGTTGGACTTGATTTGGAAAGATTTGGTAAAGGCAATGCCTTAGCCCTGTTCATTTTGCCATCTTTACTCTGACCTTCCCAAGAAGGAACAGACCTGAGTTCACAGATATTTCTCCACAGCTGGAGCCAGACAAGCCCTGTGTTTGGCAGAGGATGTGGAGAGACTGTTTAAATCCAAAGGAAATCCCTACACCCTACACTCTGAGTAGACACCCTGAGGATCAAGCCTCCTTAGCCTGTTGTATCTCTGCAGCTTGTTTCCTTGGTGAAAAACAGGGCTAAGAATTCTTGGTCAGAGACCTCAGGGGTTTATGTCTGTCCAGGTTCAACTTATAAGTTCAGGGTTTTGTTAAATGAAAAGTGGGGAAAAACCTTGTATGCCAACCTTAGCAGGCCCACACCCCAGGAAACAGACTTGGTACCCCAAGATCAACTTGTTACTAGAAACTCTTGGGAAGGTCTCTGGAAGGTTTACCAGACTCAGTCTGGTTTTGGGGCTGGGCACATCCCTTCCTGCCCTTGGTCTTCTGCTGAAGTGATGCTACTTTCAGATGAGCTCGTCTCTGTGGCTTCCATGGGGAGAAGACGCTGGCACCCGCTGCCTCTACTTCCCGTTCCCTGAGCCCCCAGGGATTCTAAATTTCCTGCCAGCCCTGCTTAACGAGAGAGGACTTAGGATCTCCTCTGTTCACAGACCTGGATATAATGCCTTCATCCCCTGCTGCCAAGTTGGCCCGTCTCATTTGATAAGAAATGTTTTCAAAGGCACTGAACTCCAACAGCTATTTTTAGTCTTTGCTCTGAGGTCGAGTGGTTTTCAAACCATTTAAATAAAATTCCAGGGTCAAGGGCTCCCTAGAGAACTGGGTCTGGCCCCACCATTCTGTCTGCCTTTGCCTGGGTAGGGTGAGGGGCTACGCGTGCCAAGTGAACCTCATTCTGTGTAGAAACCTCCTTGCTTTAACGTGTCTTGGGCCACAAAGCTACTTCATGACCAGGCCTAGAACAGAGGATGCATATATTCCATTTTTGTGTCCACTGCCATGTGGTCCCTGTTTTTCTTATAATTCCTGGGTAAACCAGTGACCTTGAACACCCCAGTGGACCACTGGCACATGAATGGAAAAGGCATTATAAGTAAGAATCTTCTCAAAAGGATTTTTAAATGTGTTTCAAATAAGTAGTAAAACCAGTAGTCCTCCAAGGGCCCAAGATCCCCAAAGGGAGGGATATCTCCAGTTTGAAAACGTGAAGCTTTAAAACAATGAAGAGCAAGTCTTCAGTTTTCCCTTTGTGGCTGAGCAAGAATTAAACATATTTTACCCATTGAACAACTGTGTGTCTTACTGTTAAGTCTGGCCACTGACCATGAATGAATCTGCAAAACCGTGTGTGTCTTCTCTTCCACAG
Seq C2 exon
TATTTTTGGGTTCAGCAGCTCGTCAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001083:ENSBTAT00000038527:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764712=SAM_2=PU(8.5=40.0)
A:
NA
C2:
PF0764712=SAM_2=FE(14.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]