MmuINT0022484 @ mm10
Intron Retention
Gene
ENSMUSG00000004085 | Map3k20
Description
mitogen-activated protein kinase kinase kinase 20 [Source:MGI Symbol;Acc:MGI:2443258]
Coordinates
chr2:72410149-72411960:+
Coord C1 exon
chr2:72410149-72410193
Coord A exon
chr2:72410194-72411929
Coord C2 exon
chr2:72411930-72411960
Length
1736 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
TGTGTGTCCTCTCTCCACAGTAT
3' ss Score
11.74
Exon sequences
Seq C1 exon
CTGCTGCCTTCCTTTGAGATTGGTGCGTGGACTGAAGACGATGTG
Seq A exon
GTAAGCCGCTCTGTTAGTGACTCTTTAGATCTGGGCAGGAAGCCGACAGATTTGCCCACAAGTTTAGAAATGCGGTTAGAGAGATCTGGGCCTATCTAGCAGAAATCAACAAATTCCTCTTTTTGCATAACTAATCTAATAGAGATTGAAAGTAAGGACTCTATGGTAAAAGCAACTAGGTCTTCAAGCCTTAGGAGAGGGCTCACTGGCTGTGGAAATACTCCAGAATGCAGTACACCACCAACAAGATAAAAGCCGTGATCCTCAGTGTCAAATACACATACTTGAAAAGATGCTTAAACTTCCCTACAGTGCCAGCTGAAGACTTGCGCATGGAGGAGAGAGACAAGGACAGCCTGGAGCTTTCTGCACAGGTTCCCTCTCCCACCTCAGGCCTGCTCTTTAAATGACAAAATGCTTAACTGCCCTCCTTGCTCAGGCCTACCCCAAGAGGAATGGACAGAGCATTCCCCATAATCTGACATTGCAGGAGGCAGGATACTTAAGTCCGAAAGAAGGGCTACATGCAGCTCTGGTAGACTCCCTGAAGAACAATCCCATGTAGCCAATTCTGTCTCCAGATCTGCTTCCTTAATGGGAAATGGTTTTGAGGAGTGCTGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCCCTCAGGGCCCGTGCCTGTCCAGGTCCATTTTACAAGCTCACGGGCATCATTAAATGAAGAGGAATGTGAAGATGGAGTGCTAGGTAGGGCTGCCAAGAACGGGCTCCACCCTAGGGAGACAGCCACCCCAAGCAAGCTATCTCAAGAAAAAGGCTCATCACTAGAAATTCCAGATCTGTTCTCCAGCTCAGCCTAGTGTGGGGTTGGGGCATGCCTCTCTGCCCTTTGTATCTTCCTTTAGCATTTGGCAGCAGCATAGACTCCACAAAGTAAAGAAGGCAGATGCCAGCTTCCTGTTTCTCATTCCCAGAACCCTAGAAGCCAAGCCTCTTGCCAGCCCTGTACATAATTGCTTCCTCCCCAGCTACAGGGATGGCCCATCTCCTCCTTTGGAAAGAGGTAGATTTGAAAGATCTGGGTTCTAGGAGCCAGTCTCAGTTTGTGCTGCCAGGTCGAGTGGCTCCCATGCCATTTGGCTAAAAGTCCATTGTCAAGGGACCCAGGGAATCAGAATGACTGAGTCCGGCCTCTCCTCTGTGTATCTTCACCAAGGTAATGTTAGGCCACCAGTAAACAGGGGCCCAGTGATATTCAAGGCCAAGAGACCTCTGGGTGTAACCACCTCAGTGGACACAGAAAGAACCATGTTTTGCCTGTCACCCCATGTGGCTGCCATGACCTGACAGGCCTAGCAGGGGACATCATTTGTCCCATCTCTCTGTCCACTGCTGTGTGGTCCTTGTTGCTCATACAGTTCCTGAAAAAAAGTACCATGGCAATCCCCACCTGCATGAGTGAGTGAAAAAGTCATTATAGCGGCACCTCTAGGAGAGATGTAAACTCTCTCCCTCAGAAGTGTCCCAGCTGCCCAATCCCCCTACGGGAGGAATATCTCCAGTTGGAAAGCTTGAGGCTTTAAAACTACCAAGAGAGCTCTTCCATCTTTCCTCTGTGGTTCAGTTAAAAACATCAGAATCTATGGGAGACTGTAATCGTTAAGAATGACTACTGCCTGTGTGTGAACCTCCCAAACCATGTGTGTCCTCTCTCCACAG
Seq C2 exon
TATTTTTGGGTTCAGCAGCTCGTCAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004085:ENSMUST00000090824:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053625=SAM_1=PU(9.7=46.7)
A:
NA
C2:
PF0053625=SAM_1=FE(13.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types