BtaINT0000600 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B8U6]
Coordinates
chr18:50450078-50452122:-
Coord C1 exon
chr18:50451960-50452122
Coord A exon
chr18:50450228-50451959
Coord C2 exon
chr18:50450078-50450227
Length
1732 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
TGACCCTGAAATCCTGGCAGGTG
3' ss Score
7.52
Exon sequences
Seq C1 exon
CTCAAGGAGAAATACGGTCCAGTCTTCACTGTGTACATGGGGCCCCGGCCAGTGGTTGTTTTATGTGGACATGAAGCAGTGAAGGAGGCCCTGGTAGACCGAGCAGATGAGTTCAGTGGCCGTGGAGAACTGGCTTCAGTAGAGCGAAACTTCCAAGGTCATG
Seq A exon
GTAGGTAACAGCAACAAAAATAAAAGCAAAATGTAATCACAAAGTGTAATGTACTTCTATGTCCCGGGTTCTTTGATAAGTACTCTAAATGAGTTACTGCTGTGACGTCTCTGAGAGCTATTAATGTCTTCCTAATTTTGCAAACGAGGAATTTGAGAATCAGAAACGTTAGTAGTAACAGTCAGTGGTAGAATCGTTTTACTTTGAACCCAAACCGTCTGACTCTAGGGGATCGTGTGTGTTACTTGTGTTATTATTTTTGATGGATGAGTGGCACTCTTGTAATTCACTAAGCTCTCATAGCCAAGCTTACTGTTTATCTTCCTATATACCCACACAGACCCAACCCATAGGTCTCTGCATCCTCCACAGATATCTGTTTAATGTTCCCTACACATCAATCTCTAATGGCCTGGAGGCAGAATTCCAGAATTCTTGCCTGGAGAATCCATGGACAGAGGAGCCTGGCAGGCTACCGTCCATAGGATTACAAAGAGTCAGACACGACTGAAGCAACTTAGCATGCACGCACATCTCACGCACTGCCCACATCATTCAATTCCAAGCAGCCTCACACCATTTTTTGATACTTTCACTCACCTACCTATCCCTATGCCTTTCCTTCCATCCATCCATTTTTCCATTGACCCATACAGCCACCAAAAATATCCATTAGACTTTCTATACAAATATCAGTATCCTTCCAACAAATTGATCTGTACATCATCTATTAATTAACTTCTCATTTACCCATACGGTCATCGTGTCATCTATCCATTCATTTTTCCTTCCATCACTCACCCACCTATTAATCATTCAGTCATCCATACATTCTTCCAACCATTTAGCCATACATCTCCAACCATCCATCCATTAGCCCTTTACCCATCCAGAAGTCTTTAATCCATCCATTTGTCAGTCATTCCAGTTACAAACACTTCCTTCCATTCAGTAATCTATCAAAATCATTTCATCAAATTTCCAAACATTAATTCACTGATGCATGCACATCCGGAAACTTCTAAATACTGTTTACTACATGGTAACTCCTTTTGTGTGGGTATATTAATGTACAGGTAAGATCTCCTGTGAACGCTTACAGGTACGTCTAGAGAATACAAGTAGAGCATAGAATATAGAAGAATACTCCCCATTCCAACATATTCTACATAAAATTCTATCTATGGTTGTATATTAAATTGCTTCAGTCATGTCCAACTCTTTGTGACCCTATGGACCCTAGCCCACCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGAATACTGGAATGTGTTGCCATGCTCTCCTCTAGGGGATCTTTCTGATCCAGGGACAGAACTCTCATCTCCTGTGGCTCCTGCATTGCAGGCAGATTCTTTACCACTGGGCCACCAGGGAAGCCCATTCTGTCTATATCTCCCCCCATATTCCTAGGCATCCATCCATTATATGCATTTATCCAGTTCCAGGTCTCTAGCCTGTAAGAAACTCTCCTTAATCTCCCACAGTCATTATTAGCCTGATTTCTTTTCCTTCGTCTCAGTCTTGGGCTGTTTTGGGGAGTCCAGTAGGGAAGGAACTTTAGTTTCCCCATTAAGCCTGGAAGGTTGAAAGAGGCATCCCCAAGGGGAAAGTTTACAGCTGTCATATCCTGGCACCCTCCCAGTCCAGCACAGAGCTGGGCACAGACAAGAGGGGAGACAGGAGCCTGACCCTGAAATCCTGGCAG
Seq C2 exon
GTGTAGCACTGGCTAATGGAGAACGATGGAGGATTCTCCGACGCTTCTCCCTGACCATTCTTCGGGACTTCGGGATGGGAAAGAGGAGCATTGAGGAGCGGATCCAGGAGGAGGCTGGCTTCCTACTAGTGGAATTACGCAAGACCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003272:ENSBTAT00000000871:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGGAGAAATACGGTCCAGTCT
R:
CCCTGGTCTTGCGTAATTCCA
Band lengths:
312-2044
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development