MmuINT0045030 @ mm9
Intron Retention
Gene
ENSMUSG00000049685 | Cyp2g1
Description
cytochrome P450, family 2, subfamily g, polypeptide 1 [Source:MGI Symbol;Acc:MGI:109612]
Coordinates
chr7:27594702-27596567:+
Coord C1 exon
chr7:27594702-27594864
Coord A exon
chr7:27594865-27596417
Coord C2 exon
chr7:27596418-27596567
Length
1553 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
GATCACTGACCTCCTGGCAGGTT
3' ss Score
7.22
Exon sequences
Seq C1 exon
CTCCAGAAAAAATATGGCTCTGTGTTCACTGTGTACTTCGGTCCAAGGCCAGTGGTTGTCTTATGTGGACATGAGGCAGTGAAGGAGGCCCTGGTGGACCAGGCAGATGACTTCAGTGGCCGTGGTGAAATGCCTACACTAGAGAAGAACTTCCAAGGTTATG
Seq A exon
GTAAGTAGCATCAATAACAACAGAAATGATTGCCATGGACTCAGTGTGTTCAAGGGTCTCTGATAAATGACTCAGGAGACTCTCCTACACTAACTCCCTTGAGAAGGCTGTGACTGCTCTGCTAATTTTGGAAGAGCAAACACTGATGATGAGAAAGGTTAGATAGTGTTGCACAGTATGTTTGAGGGCAGCTTTGTTTTTAAACTCCAGAAGTTGGACTCTATACTGCCTGCTGTGCTATTTTTATCCTTACTTTTAATGAATTGCTATGTGATATCACTTGTGTACCCTCCCAAAACCTTCATAACTAAGCTTAGTTCTTATCTTCCCAGATGTATATGCATATCTGCCACAAGAATATGTTCCTATCTGCCCATATCCATATGCATATGCGTATATAACACAAATAATTCTTATCTAGTGTTATCCATGAATTCACTCATACTTGCCTTCAAATACACTGACTCACCTCCCTCTTTTCATCTATCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTGTCTGTCTGTCTGTCTGTCTTTATATCAATACACACTTTCTCAATTCTACTCATTTGTCCATAAATCCACCAAAATATATTCATTTTCCTTTATATGCAAACATCCTATTATTCATATCTTCAATGTTCTATTTATCCATGAATCCACCCATTGTTCCATTCATACAATGAACTTTATATCATTCACACACCTATTAATCTTTCTATCCAGTCACTCTTCTGTCCACCCATCTATTTATTAATCCATCTTTTCTTCTGGCCACTATCTGTTCATCTTAATCCCTCTACCCACTAACACTTTACTCAGACATTGACTCTTTCAACCTCATAGACAGACAGACAGACAGACAGACAGACAGACAGGCATTTACCCACCCGTTCACCACACTATACATCATTCCAGTCTAGAGCACTGGTTGCTCATCTTGGTGACCTAAGTCTGATTGCCTGCACTCGGGCTCACGACCATCTATAGCTCCAGTTTCTGGGAATCTGATGCCCTCATCTAGCCTCCACCATTCCACTCTTCATTTCACTTATCAATATATTATAAAGTGATCTTATTAAATTTCCAAGCAGTTCATCAATCCTTCTATCAGGTGATTTCTACTATAGTCTTCATGCAAGGTTACTCTTTTTTGTATAGGTGTATTGATGTGAGCTTCTGTGTCCACACATATACGTATTTGTTTTTTCTTTTTTAAAAATCCATCCAATACCCAGAAAATAGTTAATATTTCCATTGAAGGGATAGTCTATATGGCATTCATCCTTACCTCATACACTCTAGGCATTAAACATGAAAGTAAGTCAATTACAGCTTGCCATCCTGTAAGAAAACTTTCTTGCTGTCCCTGACTTTTCATGCCTTATTCCCTGTTTCTTCAGTCTTGAATATTTTGGAAAGAATCTTGATTTCCCATTGAATATTGAAGGTTGAGCTTTCATAATCTTGTCTACCACAGAGTTGAGCACAGAAAGGGGAGAGGGGACAGGAGCCTGATCACTGACCTCCTGGCAG
Seq C2 exon
GTTTAGCTCTGTCCAATGGAGAACGATGGAAGATTCTTCGGCGTTTTTCCCTGACCGTCCTTCGAAACTTTGGGATGGGGAAGCGGAGCATTGAGGAGCGGATCCAGGAGGAGGCTGGCTACCTACTGGAGGAGCTCCATAAGGTCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049685-Cyp2g1:NM_013809:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGGCTCTGTGTTCACTGTGT
R:
CCTTGACCTTATGGAGCTCCTC
Band lengths:
302-1855
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: