GgaINT0040493 @ galGal4
Intron Retention
Gene
ENSGALG00000005795 | CYP2H1
Description
cytochrome P450 2H1 precursor [Source:RefSeq peptide;Acc:NP_001001616]
Coordinates
chr6:17135323-17136422:-
Coord C1 exon
chr6:17136260-17136422
Coord A exon
chr6:17135473-17136259
Coord C2 exon
chr6:17135323-17135472
Length
787 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
GTTGTTCCTTCTTGTGACAGGCA
3' ss Score
7.95
Exon sequences
Seq C1 exon
CTCAGCAAAAAGTACGGTCCTATCTTCACAATACATTTAGGCCCCAAAAAGATTGTGGTGCTGTATGGCTACGACATTGTGAAAGAAGCCCTAATTGATAACGGAGAAGCCTTCAGTGGGAGAGGAATACTGCCTCTGATTGAAAAGCTCTTCAAGGGCACAG
Seq A exon
GTGCGTCCCAGGTAACACTGCCATACAGAACTCATCGTGTCATTGGAACAGGAATCCACCTGTCAGGGCAGTGGAGGAGTGACTGGAGGGTAATACACTACATTTCTACATAAAAATTATGGAATAAAGCATTAAAAGCCCAACCCATTACTTGGGCGTAGCAGTAGGTTGAAGCCCTGGAGAACTGTTTAAGGTCCTAGGTTGCCTTCAGTGAGTTCCTTTCGATTTTCAGCACCATTCATATTCTTTCTACAGTTTTGTCCCCAAAAGGTGCCCCTAAGATCTTACTGTTATTCTTCCATTTCTGAAAATACTGGCAAAGTCCCTACAGCTCAGGAGCCATCAACTGAACACAACACTGACAAGCAAATACAGGCTGTGCTAGTTAAGGGTCCTACTCAAGATTAGGCCCTGGGCTCATTCACCATGACAGTCCCCAGCAGAGCATTTATTCAAGTAAATGCTTGTCCCGTGGTATTTTCAGTAATGATACGATGTGTGAAGGTGCATCACTGCACATCTGGGAATTTGTCTTAGCCACCTGCTCGTGGCCAAGTTGACTTTAGCACCAGTGGTCCCTTTCTATTGACAGCCCATTGTCACTTCTCTTTTTCTGGAAATAAACGGTGGTGCCTTGATCAGATTGATCTATTTGTCACCTCCATAACTGCAGGAAGATTAGGGTTTGGGGCATATCCCAATTGTGGTAGATATCTATTCCAGAACGAGGTTGGGGGGCAGAAAATTTACTTACTCATGGAATCTTTGTTGTTCCTTCTTGTGACAG
Seq C2 exon
GCATTGTGACCAGCAATGGGGAGACCTGGAGGCAACTGCGACGATTTGCCCTCACCACCCTGCGTGATTTTGGAATGGGGAAGAAGGGCATTGAGGAGCGAATCCAGGAGGAAGCTCATTTTCTGGTGGAGAGGATCAGGAAGACACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005795:ENSGALT00000040063:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCAAAAAGTACGGTCCT
R:
TGTGTCTTCCTGATCCTCTCCA
Band lengths:
311-1098
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]