HsaINT0044245 @ hg38
Intron Retention
Gene
ENSG00000108242 | CYP2C18
Description
cytochrome P450 family 2 subfamily C member 18 [Source:HGNC Symbol;Acc:HGNC:2620]
Coordinates
chr10:94687770-94688274:+
Coord C1 exon
chr10:94687770-94687932
Coord A exon
chr10:94687933-94688124
Coord C2 exon
chr10:94688125-94688274
Length
192 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
3' ss Seq
TCTGTTTTCTGTTCTGCTAGGAA
3' ss Score
9.14
Exon sequences
Seq C1 exon
TTCTCAAAAGTCTATGGCCCTGTGTTCACTGTGTATTTTGGCCTGAAGCCCATTGTGGTGTTGCATGGATATGAAGCAGTGAAGGAGGCCCTGATTGATCATGGAGAGGAGTTTTCTGGAAGAGGAAGTTTTCCAGTGGCTGAAAAAGTTAACAAAGGACTTG
Seq A exon
GTAAATGTGCATGTATCGTGTGTATGTGTACATGTGTATGTACTGGGCAGTGGCTATAGGGATGGGGAGGATGGAAAACAGGCTTGAAGAGCTCCTGGGACAGAACTTGACCTGTCCACGTGGCTGCCGAGTGTCAGCTCTCTTGTCCTTGTTTGGATTCTCCCTCGTAGCTTCTGTTTTCTGTTCTGCTAG
Seq C2 exon
GAATCCTTTTCAGCAATGGAAAGAGATGGAAGGAGATCCGGCGTTTCTGCCTCATGACTCTGCGGAATTTTGGGATGGGGAAGAGGAGCATCGAGGACCGTGTTCAAGAGGAAGCCCGCTGCCTTGTGGAGGAGTTGAGAAAAACCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108242:ENST00000285979:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCCATTGTGGTGTTGCAT
R:
TCTCAACTCCTCCACAAGGCA
Band lengths:
258-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development