BtaINT0046169 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037559 | CYP2C18
Description
Bos taurus cytochrome P450, family 2, subfamily C, polypeptide 18 (CYP2C18), mRNA. [Source:RefSeq mRNA;Acc:NM_001076051]
Coordinates
chr26:15939710-15940195:+
Coord C1 exon
chr26:15939710-15939872
Coord A exon
chr26:15939873-15940045
Coord C2 exon
chr26:15940046-15940195
Length
173 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TCTGTTTCCCCTCCTGGCAGGAA
3' ss Score
11.24
Exon sequences
Seq C1 exon
CTCTCAAACACCTATGGCCCTGTGTTCACAGTGTATTTTGGCTTGAGGCCCACTGTTGTGTTGCATGGGTATGAAGCAGTGAAAGAAGCCCTAATTGATCAGGGAGAAGAATTTTCTGGAAGAGGCAATATCCCAATGTCTCAAAGAGTTAATAAAGGATATG
Seq A exon
GTAAGTGTGCATATGCACATGTCCAACATTGGTAATGGGGGTGGGGAGAATGGAAAAGAGGAATTTGAAAAGCCCCCTCAGCAGAGCTTGGTCCATCTCTGAGGCTGCCAAGTGTCAGCTCACTCCTCCTTCTCTAGGGCCTTCCTCCTAGTCTCTGTTTCCCCTCCTGGCAG
Seq C2 exon
GAATCATTTTCAGCAACGGGAAGAGATGGAAGGAGATCCGACGCTTCTCCCTCATGACCCTGCGGAATTTTGGGATGGGGAAGAGGAGCATCGAGGACCGCGTTCAAGAAGAAGCGCACTGCCTGGTGGAGGAGTTGAGAAAAACCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037559:ENSBTAT00000040300:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAGGCCCACTGTTGTGTT
R:
GCAGTGCGCTTCTTCTTGAAC
Band lengths:
244-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]