DreINT0176213 @ danRer10
Intron Retention
Gene
ENSDARG00000092091 | wu:fd49b10
Description
wu:fd49b10 [Source:ZFIN;Acc:ZDB-GENE-030131-4664]
Coordinates
chr7:51847425-51847913:+
Coord C1 exon
chr7:51847425-51847587
Coord A exon
chr7:51847588-51847760
Coord C2 exon
chr7:51847761-51847913
Length
173 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
TATATTTTTTGTGAGTTTAGGGG
3' ss Score
1.88
Exon sequences
Seq C1 exon
TTTGCTCAGCACTATGGATCAATCTACGGGATATACATTGGTTCAAAGCCAGCAGTGGTGTTAACAGGACAGAAAATGATCAAGGAGGCACTGATCACACAAGCGGCTGAGTTTGCTGGCAGACCAAACCATATGATGATCAGTCATATAACAAGGAGCAAAG
Seq A exon
GTAGTGCATAATGAAAACAGCAGCTAACATATACTCACACGTGCACTGAGTGAGGTATTTTAACAAAAATATATTAACAAACTTCTGTTCTGTTATGTTGTTATTCTGTTCTGTTCTTCTGTTCAAACTGCTAGGATTTGATGGCTTTCAAATTATATTTTTTGTGAGTTTAG
Seq C2 exon
GGGTGATCATGGCAGATTATGGAGAAAGTTGGCGTGAACATCGTCGCTTTGCTCTGACCACACTGAGGAACTTCGGTCTTGGAAAGAAAAGTATGGAGCAGAGGATTCTGGAAGAGGTCAAACATATCTGTTTACTACTGGAGGAATCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000092091:ENSDART00000098924:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(15.2=100)
A:
NA
C2:
PF0006717=p450=FE(14.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAAAGCCAGCAGTGGTGT
R:
GACCTCTTCCAGAATCCTCTGC
Band lengths:
242-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]