MmuINT0044807 @ mm9
Intron Retention
Gene
ENSMUSG00000066704 | Cyp2b19
Description
cytochrome P450, family 2, subfamily b, polypeptide 19 [Source:MGI Symbol;Acc:MGI:107303]
Coordinates
chr7:27544055-27544509:+
Coord C1 exon
chr7:27544055-27544217
Coord A exon
chr7:27544218-27544359
Coord C2 exon
chr7:27544360-27544509
Length
142 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TGTTTCCCCTACTTTCTTAGGTG
3' ss Score
9.71
Exon sequences
Seq C1 exon
CTTCAAGAAAAATATGGAGATGTGTTCACAGTACACCTGGGACCGAGGCCCGTGGTCATGTTGTGCGGGACAGACACCATAAGGGAAGCTCTGGTGAACCAAGCTGAGGCTTTCTCTGGCCGAGGGACAGTTGCTGTGCTTGATCCAATTGTTCAGGGATATG
Seq A exon
GTGAGATATGGGACAGGGTGAAAAGGAGGATGTGACCCAGGAAGGTGAATCTGAGAGGTGGGATCCAAGCCATGGGAAAGGACTGGGGATTCTCTGAATTTCCAATGTGACCCAACCACCCATGTTTCCCCTACTTTCTTAG
Seq C2 exon
GTGTGATCTTTTCCAGTGGGGAACGTTGGAAAACCCTTCGGCGATTCTCTCTGGCCACCATGAGAGACTTTGGGATGGGAAAGCGGAGTGTGGAGGAGCGGATAAAGGAAGAGGCCCAATGTTTGGTGGAGGAACTGAAGAAATACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066704-Cyp2b19:NM_007814:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTCACAGTACACCTGGG
R:
TTATCCGCTCCTCCACACTCC
Band lengths:
248-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: