DreINT0054294 @ danRer10
Intron Retention
Gene
ENSDARG00000018485 | cyp2v1
Description
cytochrome P450, family 2, subfamily V, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-040912-139]
Coordinates
chr20:25655578-25655962:+
Coord C1 exon
chr20:25655578-25655740
Coord A exon
chr20:25655741-25655812
Coord C2 exon
chr20:25655813-25655962
Length
72 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
3' ss Seq
TGTGTAATGTCTCGCGACAGGTC
3' ss Score
9.4
Exon sequences
Seq C1 exon
ATGTCGGACCACTATGGCAACATATTCAGCTTGCGTCTGGGAAGCTTAAACACAGTTGTTGTGAACACCTACAGTATGGTGAAGAAAGTTCTTAATGACCAGGGCAACTCTTTCATGTACCGCCCAGTCAATGATATCACCGAAAGAATATCCAAGTGCCAAG
Seq A exon
GTGAACATTAATTTGACATTTTAACTCTCTGTAAACATCACATATTTTATATTGTGTAATGTCTCGCGACAG
Seq C2 exon
GTCTAACCTTTAATAATGGCTACAGCTGGAAGCAACATAGGCGTTTTACTCTAAGTACTCTTAAATTCTTTGGTGTGGGAAAGAGAAGCCTGGAATTCATCATCATGGAGGAGTACAAATTCTTGCACCAGTCCATCATGGATACCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018485:ENSDART00000102913:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAGCTTGCGTCTGGGAAG
R:
GTTGCTTCCAGCTGTAGCCAT
Band lengths:
176-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]