GgaINT0042917 @ galGal3
Intron Retention
Gene
ENSGALG00000023925 | Q8QFT4_CHICK
Description
NA
Coordinates
chr6:17658584-17659389:+
Coord C1 exon
chr6:17658584-17658746
Coord A exon
chr6:17658747-17659239
Coord C2 exon
chr6:17659240-17659389
Length
493 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGT
5' ss Score
7.76
3' ss Seq
TCTTTCTTCTTCCTCTACAGGCA
3' ss Score
12.38
Exon sequences
Seq C1 exon
CTTGCTGAGAAATATGGGCCCGTCTTCTCAGTGCAACTGGGTTCAACTCCAGTAGTGGTGCTATCTGGATATGAGGCGGTGAAAGAAGCCTTGATTGATCGTGCGGATGAGTTTGCTGCCAGAGGACACATGCCTATTGGGGACCGGGCTAACAAAGGATTAG
Seq A exon
GTATGTTCACTGACTCAGCCTCCCCTGAGGAAAAGGGAAGCGCTGAGGACAAGTATGGCAGATGAGGGCTGGAGCAAATGATGCATGAGGGCAGTCAGACTGAAGAGGGTGGGTCCCCCCGGCACAAGGGAAGGCAGGGCAGCTCTCAATCCCTGGCATCCACCACCTGAACAGGGTAAGAGACACATGCAGCCAGACTTGCCTCGTGTGTGCACAGAGAGGGCAAGAAGCTACGCAGCCATGTTGCAGTAAGGGAAGTTCTGTGTGGATACAAGGGATGAACTGTTCACAAGGAGGTTGGCTATGTCCTGGAGAAGGCCAACTGCAGGCTGACGGACTACAGCACCTCCAGAGGTTGCCTCCAAACCACAGTACTGCACAGTGCTATGTCAGTGCTCCCCCACAGGCAGCCCTCACTCTCATTGCGAGCCTCCACTCCTCTCAGGTCCAGCACTCCAAAGACAGCTCTCTCCTCTTTCTTCTTCCTCTACAG
Seq C2 exon
GCATTATTTTCAGCAACAACGAGGGATGGTTACACGTTCGGCGGTTTGCTCTCAGCACTCTGCGCAACTTTGGGATGGGGAAGAGGAGCATTGAAGAGAGGATCCAGGAGGAAGCTGAGCACTTGCTTGAAGAGATCACAAAAACAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023925:ENSGALT00000008787:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(18.6=100)
A:
NA
C2:
PF0006717=p450=FE(17.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGAGAAATATGGGCCCG
R:
TTTGTTTTTGTGATCTCTTCAAGCA
Band lengths:
310-803
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]