HsaINT0044220 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr19:41386384-41387656:-
Coord C1 exon
chr19:41387494-41387656
Coord A exon
chr19:41386534-41387493
Coord C2 exon
chr19:41386384-41386533
Length
960 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
CCCCGCCTTGACCTCCCCAGGCG
3' ss Score
8.82
Exon sequences
Seq C1 exon
TTCAGTGAGTGCTATGGCCCCGTGTTCACCATTCACTTGGGGCCCCGGCGGGTCGTGGTGCTGTGTGGACATGATGCCGTCAGGGAGGCTCTGGTGGACCAGGCTGAGGAGTTCAGCGGGCGAGGCGAGCAAGCCACCTTCGACTGGGTCTTCAAAGGCTATG
Seq A exon
GTGAGGGGGTGCCCAAGATGGGGAAGGTGGCCAGGCGGACACGATGGTCTCAGTGTTGCCAGCCTTCTCCCTGACTCTCCTGCCCACTGGAGGCTATGGCAGAACCCCCGGTCTGGTCTTATCTCCCCATCTCCCTTCACTGTGGCCTCTCCATGTGTATCCCTCACCTGTCTCCAGCGTCCCTGTCGTGATTCCTCCCTGCCTCTCTCTGCCCCACCTCCTTATTCTCTCTCACTGGAGTCTCCTCTTTCCCCTCTCTCTCCATCTCTGAGGACATCCTGGGTTTCTGTTTTCCAGCCCTGGTCCTCTGTCTTCATTTGTCTTTTTGTTGCTCTCAGCTTCTGTGCTTCTCCATGTTTCTCCTCTCTCCACTTCCCTCTCTCACTTTTTCCTCTCCCTTAGGATTTCATGCTATTCTTACTTCCACATCTCCAGCCTCCATCTCCTGGTAACAGTCTCTCTTCCTTCCAGACCCTCTCTGTTTCTGTCTCAGTATTTTTCTCTCTTCTCCAGCTCAGCTTAAGAATGTTTCACCATTTTTATTTCCTCCTCCCAGATCTCCCCATATCTCACTTCCCCTCCCTCCATCCTCTTCCTCCATCTCTCTCTTTCTCTCCCCACTTCCTACCCTTCCTCCATGGAGTATCCCCTTATCCCTCTGTTTCTCTGCGCATCTCTATCTGGCCTTTCTGTTTCTCTTCTGATTCTCTTATTCTTTCTACCCGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCGTGTTTCTCTGACTGAGTTTGCACCTGTCCTGGGCACTGGCACTGAATCCATCTCTCTCCCACCCCACTACCCCTCTGCTCCACCCTTGGGGAGCCCCTTGGAACTGGTCCGCTCCTGCCACCGCCGCCCCCTGACCTCTCTCCACCCCCGCCTTGACCTCCCCAG
Seq C2 exon
GCGTGGCGTTCAGCAACGGGGAGCGCGCCAAGCAGCTCCTGCGCTTTGCCATCGCCACCCTGAGGGACTTCGGGGTGGGCAAGCGAGGCATCGAGGAGCGCATCCAGGAGGAGTCGGGCTTCCTCATCGAGGCCATCCGGAGCACGCACG
VastDB Features
Vast-tools module Information
Secondary ID
-CYP2A7:NM_000764:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGTGAGTGCTATGGCCCC
R:
CTCCGGATGGCCTCGATGAG
Band lengths:
305-1265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)