MmuINT0044775 @ mm9
Intron Retention
Gene
ENSMUSG00000005547 | Cyp2a5
Description
cytochrome P450, family 2, subfamily a, polypeptide 5 [Source:MGI Symbol;Acc:MGI:88597]
Coordinates
chr7:27620814-27621843:+
Coord C1 exon
chr7:27620814-27620976
Coord A exon
chr7:27620977-27621693
Coord C2 exon
chr7:27621694-27621843
Length
717 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
CTTCTCACTCACCTTCCCAGGCG
3' ss Score
8.15
Exon sequences
Seq C1 exon
ATCAGCCAACGTTATGGTCCTGTATTCACCATCTACCTGGGACCTCGCCGAATTGTGGTGCTGTGCGGACAGGAGGCAGTCAAGGAAGCTCTGGTGGACCAAGCTGAGGAATTCAGCGGGCGGGGCGAGCAAGCTACCTTCGACTGGCTTTTCAAAGGCTATG
Seq A exon
GTGAGAGGGTCTTGACACAGGGGAATGAGGCAGAGGACATTTGAGAGCATCGTTCCCACCCCTGCTCCCCCCACCTCTGACTTTTCCACCCCTCCAGGCTATCTTCTCCCCACGTCCCTGCCTCCCACTGTGTCTAGTCTCAGACTCATCTCTCTGACTCTATTTCTTGATTCCCCCACCTCCACCCGTGCCTCCTCTTCCACCTTGAAATTCCTCTGTCGGAATCCTGCGCCTCTAGCAGGATCCGAAGCTTCCCTGTAGCCCACGCCATCATTTTCAGCTTTGGTGATTGCTTTCTCTCATCCTCTCCCTTGCTTTCTACTGTCAGACATGGCAGGACCTTTGTTCCCAGGAACTGTCTCCCAGCAACAATGTCTCCTCTCTCCAGACTCTCTTTGGGTCTCTCTCTTTATTTCCGTCTCTTTTGTTGCTCAATTATACATCTTTCTCAACAATAATCGCCACCAGATCTCTTCAGTCTCCTGTCTCTCGCCTCTGTCTCTGTCCATCTGTCTCCCTCTTCTTACTGTCCTGTTACTCGCTCTCTTTTATCTGTAGTTTTCTTGGTGCCTTCTTGTGTTTTGCATTTGCATTTCTAATGATCTGTGTGCATCTTTCTCCTTCTTGCCCTCCTGTTAGGGGAACAGCGCAAGGGTTCAGTGGCCAGCCATGCTCCTTTTCTCTGACTTCTTTCTGGCTTCTCACTCACCTTCCCAG
Seq C2 exon
GCGTAGCCTTCAGCAGCGGGGAGCGAGCCAAACAGCTAAGGCGCTTCTCCATCGCCACGCTGCGGGACTTCGGCGTGGGGAAGCGTGGCATCGAGGAGCGCATCCAAGAGGAGGCGGGCTTTCTCATCGATTCATTTCGGAAGACGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005547-Cyp2a5:NM_007812:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCCAACGTTATGGTCCTG
R:
TCGTCTTCCGAAATGAATCGA
Band lengths:
310-1027
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: