GgaINT0030798 @ galGal3
Intron Retention
Gene
ENSGALG00000008178 | E1C788_CHICK
Description
NA
Coordinates
chr9:16790597-16791764:-
Coord C1 exon
chr9:16791597-16791764
Coord A exon
chr9:16790754-16791596
Coord C2 exon
chr9:16790597-16790753
Length
843 bp
Sequences
Splice sites
5' ss Seq
GAGATGCGT
5' ss Score
0.24
3' ss Seq
CATCAAATTGATTCTTGATGGCT
3' ss Score
-5.71
Exon sequences
Seq C1 exon
CTAGCAAAAGCCTATGGCAACATCTGCACCCTGTGGCTGGGTCACAAACCCATAGTGGTGCTGTATGGCTTCAAAGCGGTGAAGGATGGTCTCACCACCAACTCAGAGGATGTTTCTGGGCGGCTACAGACCTACTTGTTCAACAGATTTTCTTCTGGAAAAGGTGAG
Seq A exon
ATGCGTATATCTGCTGAAGGACTTTGTCTGCTGACAAGCTCTTAGTTCCCTGTTCACCCATTCCATTTGTTCATGAGGAGCAAATAAAGCCATTCTGCAGCGTTCCTGTTGTCTCCTAAGTCCCACTGTCACACATGCCTCCCAGAATCTTACCAAAGCCAGCAGTGGTTGTACTTGTTAGTCTAATTTATCCATTATTGGTGTTGTCTAAGTTTATGCCTTGCTTTGCAATAACCCATCTGATGCCTTTAAATCCTTCACCTGGAGTTGAGGAGCAGAGGCTGAAGTAATTCTTGAAGCTCCCAGTTGCTTGTTTACACAGTGGCTGCTGTGGAGAAAGCATGCACTGAGCTGTTAAACAAGAAATGGCCCTTTGGGGTGTCCCAAGGCACTGGAGTTTTAGATGTGTTAGTGAGACTGTAGGTGCAATGTGTCTTTGTTTAGAACTTCTTATTGTGCTGCTGTTTACATCAGGCACTGCTGAATTTCAGTGGATGGAGCATAGAGTTCTGTATTTGAAACAGGAGTGGCTGAACTGGTTTCTGCCAGCCTCGTATCCATCCAAGCATAGGGGAACAAGAATAGGAAGCCTGCAGACCTCTCCAATGGGCTCCTCGGAAAAGTCTATAGGCCTTGAGCAGCTCAGTGAGAGGGACCATCGTATTTCCTGGTGGGAGAAACCTGAACGTACTGTTGGCTGAGGAAAGCTCTCTGCCACCCCTGCAGTGGTGACGCAACACCTGTAGGGAGACGATACCCATGTGGGGATGTTGGCAAACACAGCTTGCAAGAGAGTATCAATGTGACATGAATATTAACATGGCATCAAATTGATTCTTGATG
Seq C2 exon
GCTGAAGGTATCCTGGTCTCAAATGGTCTTATCTGGAAAGATCAGAGGCGTTTTGGAATTGCGACTCTCCGGAAACTGGGAATGGGGAATAAAGGAATGGAACGTGGGATACAAGCCGAGGCCCGGCACCTGGTGGAGTTCTTCAGGAGCAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008178:ENSGALT00000013305:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.0=100)
A:
NA
C2:
PF0006717=p450=FE(11.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACATCTGCACCCTGTGGC
R:
TGCTCCTGAAGAACTCCACCA
Band lengths:
302-1145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]