BtaINT0092453 @ bosTau6
Intron Retention
Gene
ENSBTAG00000026501 | MGC127055
Description
Bos taurus cytochrome P450, family 2, subfamily D, polypeptide 6 (CYP2D14), mRNA. [Source:RefSeq mRNA;Acc:NM_174529]
Coordinates
chr5:113623996-113624838:-
Coord C1 exon
chr5:113624667-113624838
Coord A exon
chr5:113624149-113624666
Coord C2 exon
chr5:113623996-113624148
Length
518 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGC
5' ss Score
2.46
3' ss Seq
CGTGCCCGCCACTTCCCCAGGAG
3' ss Score
7.68
Exon sequences
Seq C1 exon
CTGCGGCGCCGCTTCGGGAACGTGTTCAGCCTGCAGCAGGTCTGGACGCCGGTAGTCGTGCTCAACGGGCTGGCGGCTGTGCGCGAGGCACTGGTGTACCGCAGCCAGGACACTGCCGACCGTCCACCTCCGGCCGTCTACGAGCACCTGGGTTACGGGCCGCGCGCCGAAG
Seq A exon
GCAAGCGGAGAGAGCAGGGTCGCAGATTTTCGGTGCAGGAAAGAGCCAAAGAATTTGAGGGCGGGGCAGGTGGAGAAAGGAGACTATGCCGAACGTTGGGGGAGGAGAAATTAGATGAGGCAGAGGGCGGGGCCTTACTAAGAGAGGGCGGCCCAGGGCCACTGCGAACGCGAAGGGGACGTCGGTGTGGGCAGGAAAGAGGACAAAGTCGGGGTGGGCAGGTGTGGGCCAGGACTTTCCCCACGTGGCAAACGGGGTCTCCGTGGGCAAAATAAAAAGTGGAGCCAAGACGGGCGCCTAGCAGGGGAGACTCGGGGAGCAGTGTGGGCCGACAGAGAATGGGGGCAGTCTCCAGACTGAAGGGGGTGTGAAAGTGGGCGGCATTTAGGACGGAAGGGCGAGGCCAGTGTGGGCGGGCAGCGCCGAGAACTTCCCCCATGGGGGCGGGGCTGTGAGCAGATCCCCGGGAGGGGCGGGGCCAGACCTCAGCCACGCCCACGTGCCCGCCACTTCCCCAG
Seq C2 exon
GAGTGATCCTGGCGCGATATGGGGACGCCTGGCGCGAGCAGCGGCGCTTCTCCCTGACCACCCTGCGCAACTTCGGCCTGGGGAAGAAGTCACTGGAGCAGTGGGTGACCGAGGAGGCCTCGTGCCTCTGTGCCGCCTTCGCCGACCAGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026501:ENSBTAT00000000869:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.4=100)
A:
NA
C2:
PF0006717=p450=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACGTGTTCAGCCTGCAG
R:
GAAGGCGGCACAGAGGCA
Band lengths:
296-814
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]