Special

MmuINT0044982 @ mm9

Intron Retention

Gene
ENSMUSG00000022445 | Cyp2d26
Description
cytochrome P450, family 2, subfamily d, polypeptide 26 [Source:MGI Symbol;Acc:MGI:1923529]
Coordinates
chr15:82623138-82623727:-
Coord C1 exon
chr15:82623556-82623727
Coord A exon
chr15:82623291-82623555
Coord C2 exon
chr15:82623138-82623290
Length
265 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAAG
5' ss Score
1.31
3' ss Seq
ACACACAGATATGTCTGCAGGTG
3' ss Score
4.21
Exon sequences
Seq C1 exon
CTTCAAAACCGCTATGGCAATGTGTTCAGCCTACAGATGGCCTGGAAGCCCGTGGTTGTGGTCAACGGACTGAAGGCAGTGCGGGAACTGCTGGTGACCTATGGAGAGGACACTTCTGACCGCCCCCTAATGCCCATCTATAATCACATAGGCTATGGGCACAAATCAAAAG
Seq A exon
GCAAAGCTCTATAGTGGGGGCAAGGCAGGGAGAGTAGGGCTTGAGAGGGGTGAGCAGAAGATAGACAGACCTAATGGAGATGATGTGGTCCGGCAAGGCAAGGGAAAAACACTGGGGTGGAGGGTGGAGCCTAAGGAATGCAAGGTGCCAATATGTGCTAGAAAAGTGCTGGGCACTGACTGCTAAGACTGACCACAGAGAAATGTTGGGAACAGAAGAGACCACATAGCTAGGTGCCCTCAGTTACACACAGATATGTCTGCAG
Seq C2 exon
GTGTGATCCTTGCACCTTACGGGCCCGAGTGGCGAGAGCAGCGGCGATTTTCTGTGTCTACCCTGCGTGACTTCGGCCTGGGCAAGAAATCACTGGAGCAGTGGGTGACAGAGGAGGCTGGCCACCTCTGCGATGCTTTCACCAAGGAGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022445-Cyp2d26:NM_029562:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0006717=p450=FE(12.4=100)

							
A:
NA

							
C2:
PF0006717=p450=FE(11.1=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000006094





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr22:42548491-42549038 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr5:113624149-113624666 
ALTERNATIVE
BtaINT0092453
(MGC127055)
Chicken
(galGal4)
chr8:25583318-25583535 
ALTERNATIVE
GgaINT0036002
([1])
Chicken
(galGal3)
chr8:27460756-27460973 
ALTERNATIVE
GgaINT0036002
(F1NT96_CHICK)
Zebrafish
(danRer10)
chr20:25671597-25672638 
LOW PSI
DreINT0054274
(cyp2p7)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GTGTTCAGCCTACAGATGGCC

				
R: 
TTGGTGAAAGCATCGCAGAGG

				
Band lengths: 
296-561

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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