MmuINT0044982 @ mm10
Intron Retention
Gene
ENSMUSG00000022445 | Cyp2d26
Description
cytochrome P450, family 2, subfamily d, polypeptide 26 [Source:MGI Symbol;Acc:MGI:1923529]
Coordinates
chr15:82792708-82793297:-
Coord C1 exon
chr15:82793126-82793297
Coord A exon
chr15:82792861-82793125
Coord C2 exon
chr15:82792708-82792860
Length
265 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAAG
5' ss Score
1.31
3' ss Seq
ACACACAGATATGTCTGCAGGTG
3' ss Score
4.21
Exon sequences
Seq C1 exon
CTTCAAAACCGCTATGGCAATGTGTTCAGCCTACAGATGGCCTGGAAGCCCGTGGTTGTGGTCAACGGACTGAAGGCAGTGCGGGAACTGCTGGTGACCTATGGAGAGGACACTTCTGACCGCCCCCTAATGCCCATCTATAATCACATAGGCTATGGGCACAAATCAAAAG
Seq A exon
GCAAAGCTCTATAGTGGGGGCAAGGCAGGGAGAGTAGGGCTTGAGAGGGGTGAGCAGAAGATAGACAGACCTAATGGAGATGATGTGGTCCGGCAAGGCAAGGGAAAAACACTGGGGTGGAGGGTGGAGCCTAAGGAATGCAAGGTGCCAATATGTGCTAGAAAAGTGCTGGGCACTGACTGCTAAGACTGACCACAGAGAAATGTTGGGAACAGAAGAGACCACATAGCTAGGTGCCCTCAGTTACACACAGATATGTCTGCAG
Seq C2 exon
GTGTGATCCTTGCACCTTACGGGCCCGAGTGGCGAGAGCAGCGGCGATTTTCTGTGTCTACCCTGCGTGACTTCGGCCTGGGCAAGAAATCACTGGAGCAGTGGGTGACAGAGGAGGCTGGCCACCTCTGCGATGCTTTCACCAAGGAGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022445:ENSMUST00000006094:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.4=100)
A:
NA
C2:
PF0006717=p450=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCAGCCTACAGATGGCC
R:
TTGGTGAAAGCATCGCAGAGG
Band lengths:
296-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types