RnoINT0044342 @ rn6
Intron Retention
Gene
ENSRNOG00000008988 | Cyp2d2
Description
cytochrome P450, family 2, subfamily d, polypeptide 2 [Source:RGD Symbol;Acc:2471]
Coordinates
chr7:123654430-123654988:-
Coord C1 exon
chr7:123654817-123654988
Coord A exon
chr7:123654583-123654816
Coord C2 exon
chr7:123654430-123654582
Length
234 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAAG
5' ss Score
1.31
3' ss Seq
ACACGCAGATGCATCTGCAGGTG
3' ss Score
3.69
Exon sequences
Seq C1 exon
CTTCGAAGCCGCTATGGTGACGTGTTCAGCCTACAGATAGCCTGGAAGCCTGTAGTTGTGATCAACGGGCTGAAGGCCGTGCGGGAACTGCTGGTGACCTATGGAGAGGACACTGCTGACCGCCCCCTACTGCCCATCTATAATCACCTGGGCTATGGGAACAAATCAAAAG
Seq A exon
GCAAAGCACTATAGTGTGGGCAAGGCAGGGAGAATAGGGCTTGAGAGGGGAGAACTGAAGATGGCTATGGAGATATGTGGTCAGGCAATTGAAGATGGAGGGTGGAGCTGACAGTGCAGATATGTGCTAGAAAAATGTTGGGGACTGACTGCTAACATTAACTACAGGGAAGTGTTGGGAACAGAGGAGACAGCATAGCCCAGCATCCGTGGTAACACGCAGATGCATCTGCAG
Seq C2 exon
GTGTGGTCCTTGCACCTTACGGACCTGAGTGGCGAGAGCAGAGACGATTCTCTGTGTCCACCCTGCGTGACTTCGGCGTGGGCAAGAAATCGCTGGAGCAGTGGGTGACAGAGGAGGCCGGCCACCTCTGTGACACCTTCGCCAAGGAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008988:ENSRNOT00000012413:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.4=100)
A:
NA
C2:
PF0006717=p450=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACGTGTTCAGCCTACAG
R:
CTTGGCGAAGGTGTCACAGAG
Band lengths:
303-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]