DreINT0054274 @ danRer10
Intron Retention
Gene
ENSDARG00000042980 | cyp2p7
Description
cytochrome P450, family 2, subfamily P, polypeptide 7 [Source:ZFIN;Acc:ZDB-GENE-041001-155]
Coordinates
chr20:25671434-25672788:+
Coord C1 exon
chr20:25671434-25671596
Coord A exon
chr20:25671597-25672638
Coord C2 exon
chr20:25672639-25672788
Length
1042 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
AATTAATATTACATTAACAGGGT
3' ss Score
4.62
Exon sequences
Seq C1 exon
TTTGCTGAAAAATATGGCAAGATTTTCAGCATAAGACTTTTTGGACCAAGAATTGTAGTGTTGGATGGATATAAACTGGTAAAGGAGGTGTATTTGCAACAGGGTGACAATCTGGCTGATCGGCCCATTTTACCAATGTTTTATGACATCACTGAAGACAAAG
Seq A exon
GTCAGTCTGAATGAAAAATGCCATTTACTCACCTTCAGTGTTCAAATTTTCAAGTTATGCTGGCTGAATTTAAATGTAGCTCTAAAATTAAGCTAAATCAAGTTTCTACAGAGAGTCTCATCTGTTTCAGGCTAACAACCAAGCTAAGATTAATCCTAGATGAAGATTAATACTACATAAAAAAAAGATTAAAGAGTAGAAAATATGATTAAATAGATTATTTTAAAGGTAAAATAGATGCACAATATTGAGTGTTTGCGGTTAATCTTCATGATAAATTTCCTGGTTACATTAATGTTTGTAGTTCACATTTAAGGCAATGACTGACTGTTTTAAGCTCAACTCTTCCTTTTGAAGAGTTCACAATTAGCTGACGATTAATTATAAAACAAGTTTGGCATGCTGTCCTGGGAGAGATCCCTGGGCTCCCTCCTGTTTGCAGGGCGAGAGGGGAGCTCTGAGCTCAGGTAGGTCTCAAGAACTCCCCCTTATTTAATAAGAGCTGATGACAGAAAATGATTGGTATGAAGGGATATGCTGCTGGATGAGAGTTTAACGGTAATGCTAAATATAGATTGATCAATTCACTTATGGTGCATGTTTTCTGGAATGTGGGAGGAAACCATAGAACCCTGGGGGAAACCCACGCAAGCACGGGAAGAACATGCTAACTTCGCACAGAAACAACAGCCAGTCTGTTAAAGGACTAGAACCGGTCACGTTCTTGCTGTGAGGCAACCGTGTTAATCACTGGGCCACCATGCCGCCCTATGAAGGGAAAGGTGGAGGAGTAGGGGTGGAAGGGGGGAGTCTTCAAATCGAAGTTGACTGTAGTGAGAAACCCTGGCTCTTTACAGTGGCTTAGGAATCGTCTGATTGGTGAATCATGCATTAGTTAATGCAGAACCAGCCGTGTTCAATCATAATCACGTTATCGTTTTAAAATTAGTTTATAAATAAACTTCACTTAATAGATAGTAGACTTATACTTAAGAGAGGAATAAAAAAATAATAATAATCTAAATTAATATTACATTAACAG
Seq C2 exon
GGTTAATTGGGTCCAATGGGTATAAATGGAAGCACCAGAGACGATTTGCACTCTCAACTTTTCGAACCTTTGGATTGGGGAAGAAAAGTCTGGAGCCGTCCATTCTCCTGGAATGCAGTTGTCTGAATGACGCCTTTTCAAATGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042980:ENSDART00000063107:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAAAAATATGGCAAGATTTTCA
R:
CTTGTTCATTTGAAAAGGCGTCA
Band lengths:
311-1353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]