GgaINT0036002 @ galGal3
Intron Retention
Gene
ENSGALG00000011394 | F1NT96_CHICK
Description
NA
Coordinates
chr8:27460606-27461136:-
Coord C1 exon
chr8:27460974-27461136
Coord A exon
chr8:27460756-27460973
Coord C2 exon
chr8:27460606-27460755
Length
218 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
CTCTCGAATGGTTCTGCCAGGGC
3' ss Score
4.21
Exon sequences
Seq C1 exon
CTTACTGAAAAACTTGGGGATATCTTCAGCATGCAAGCAGGCAGCCAGTCATTTGTGATTGTAAATGGACTTCCACTGATCAAGGAAGCCCTTGTGACCCAGGGAGAGAACTTCATGGATCGCCCTGAAATTCCTCTTGACACAGATATCTTCAGCAAACTGG
Seq A exon
GTGAGCTATCTATTGAAATACATATCTGAAATGCTCTGTCAATGTGTTGAGCTTTCAAATATACCAGAAGGGAAGCTGGAGACAATACCATGGCTTGACATTCATGGTGAGCAGAGGCACCAGCATGCTTGAGCACCCTTTATCAAGGCTGATACCCTCCAAATTCTTCCCCTCACTGAGGGCATCTACATTCACTCACTCTCGAATGGTTCTGCCAG
Seq C2 exon
GGCTGATCTCTTCCAGTGGGCACCTGTGGAAGCAGCAGAGAAGGTTCACTTTGACCACCCTTCGAAACTTTGGCCTGGGGAAGAGGAGCCTGGAGGAGCGGATACAGGAGGAGTGCCGATTCCTCACGGAAGCGTTCAGGGATGAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011394:ENSGALT00000017746:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGATATCTTCAGCATGCA
R:
CTGCTCATCCCTGAACGCTTC
Band lengths:
298-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]