GgaEX1002571 @ galGal3
Exon Skipping
Gene
ENSGALG00000011394 | F1NT96_CHICK
Description
NA
Coordinates
chr8:27460606-27461913:-
Coord C1 exon
chr8:27461692-27461913
Coord A exon
chr8:27460974-27461136
Coord C2 exon
chr8:27460606-27460755
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTTATTTACCCCTTGTGCAGCTT
3' ss Score
7.28
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
CTCTGCGTTTGTGCCCACAGCTGCACCCGCACCATGCTGCGCTTCCTCTGGGACAGCATCTCCCTGCAGATGCTCTTCGTCTTCCTCCTTGTCTTCCTGCTTGTCTCGGACTACATGAAGAGGAGAAAGCCGAAGGACTTCCCCCCAAGTCCTTTTTCCTTCCCTTTCCTGGGAAATGTGCAGTTTATGTTTGCGAAAGACCCCGTGGTTGCAACACAGAAG
Seq A exon
CTTACTGAAAAACTTGGGGATATCTTCAGCATGCAAGCAGGCAGCCAGTCATTTGTGATTGTAAATGGACTTCCACTGATCAAGGAAGCCCTTGTGACCCAGGGAGAGAACTTCATGGATCGCCCTGAAATTCCTCTTGACACAGATATCTTCAGCAAACTGG
Seq C2 exon
GGCTGATCTCTTCCAGTGGGCACCTGTGGAAGCAGCAGAGAAGGTTCACTTTGACCACCCTTCGAAACTTTGGCCTGGGGAAGAGGAGCCTGGAGGAGCGGATACAGGAGGAGTGCCGATTCCTCACGGAAGCGTTCAGGGATGAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011394-'1-1,'1-0,2-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=35.1)
A:
PF0006717=p450=FE(11.9=100)
C2:
PF0006717=p450=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTCCTGCTTGTCTCGGA
R:
ATCGGCACTCCTCCTGTATCC
Band lengths:
253-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]