GgaEX1002571 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NT96]
Coordinates
chr8:25582772-25584455:-
Coord C1 exon
chr8:25584254-25584455
Coord A exon
chr8:25583536-25583698
Coord C2 exon
chr8:25582772-25582932
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTTATTTACCCCTTGTGCAGCTT
3' ss Score
7.28
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
CTGCACCCGCACCATGCTGCGCTTCCTCTGGGACAGCATCTCCCTGCAGATGCTCTTCGTCTTCCTCCTTGTCTTCCTGCTTGTCTCGGACTACATGAAGAGGAGAAAGCCGAAGGACTTCCCCCCAAGTCCTTTTTCCTTCCCTTTCCTGGGAAATGTGCAGTTTATGTTTGCGAAAGACCCCGTGGTTGCAACACAGAAG
Seq A exon
CTTACTGAAAAACTTGGGGATATCTTCAGCATGCAAGCAGGCAGCCAGTCATTTGTGATTGTAAATGGACTTCCACTGATCAAGGAAGCCCTTGTGACCCAGGGAGAGAACTTCATGGATCGCCCTGAAATTCCTCTTGACACAGATATCTTCAGCAAACTGG
Seq C2 exon
GAAATCCTTTCAACCCTCACCTTAAAATCAACAATGCTGTTTCAAACATCATCTGCTCCGTCACCTTTGGCAACCGGTTTGAATACCATGATGAGAACTTCCAAACCTTGCTGCGGCTGATGGATGAGACTGTTACCCTCCATGAGAAAATAATGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011394_MULTIEX2-2/3=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(6.5=41.3)
A:
PF0006717=p450=FE(13.6=100)
C2:
PF0006717=p450=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCATCTCCCTGCAGATG
R:
TTCAAACCGGTTGCCAAAGGT
Band lengths:
254-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]