GgaEX1002570 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NT96]
Coordinates
chr8:25583536-25585001:-
Coord C1 exon
chr8:25584685-25585001
Coord A exon
chr8:25584254-25584455
Coord C2 exon
chr8:25583536-25583698
Length
202 bp
Sequences
Splice sites
3' ss Seq
CTCTGCGTTTGTGCCCACAGCTG
3' ss Score
11.16
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GCGCGGCGCGACGGGAACGCGGCAGTTCAGCAAAACAGCGCGCACGGCAAAATTAATCATCGGAGAAGAAGGAGAAGGGAAGGGACGGCAGGGGGGCCGGGAGCGGGGCCGGTGTCAGCGCCGGGGCAGGGTGCGCTCGTGCCAGCGCAGCGCTCAGCGCCGCCTGCGCCCTGCCAGCACCGCCCCGTGGCAGCGGACCCTCGCCCCGTGAGTCAGAGGCGCTGTGGGAGCTCCGTGCAGCCTTATCTCGCGTCCCTTTTGTGGCCCGGCGCTGTGTGCGGCTCTGCGCGGCGGGGAGGCGGTGGCAGTGAGACACG
Seq A exon
CTGCACCCGCACCATGCTGCGCTTCCTCTGGGACAGCATCTCCCTGCAGATGCTCTTCGTCTTCCTCCTTGTCTTCCTGCTTGTCTCGGACTACATGAAGAGGAGAAAGCCGAAGGACTTCCCCCCAAGTCCTTTTTCCTTCCCTTTCCTGGGAAATGTGCAGTTTATGTTTGCGAAAGACCCCGTGGTTGCAACACAGAAG
Seq C2 exon
CTTACTGAAAAACTTGGGGATATCTTCAGCATGCAAGCAGGCAGCCAGTCATTTGTGATTGTAAATGGACTTCCACTGATCAAGGAAGCCCTTGTGACCCAGGGAGAGAACTTCATGGATCGCCCTGAAATTCCTCTTGACACAGATATCTTCAGCAAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011394_MULTIEX2-1/3=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=PU(6.5=41.3)
C2:
PF0006717=p450=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGAGAAGGGAAGGGACG
R:
AAATGACTGGCTGCCTGCTTG
Band lengths:
305-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]