MmuINT0045005 @ mm9
Intron Retention
Gene
ENSMUSG00000068086 | Cyp2d9
Description
cytochrome P450, family 2, subfamily d, polypeptide 9 [Source:MGI Symbol;Acc:MGI:88606]
Coordinates
chr15:82284028-82284620:+
Coord C1 exon
chr15:82284028-82284199
Coord A exon
chr15:82284200-82284467
Coord C2 exon
chr15:82284468-82284620
Length
268 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
ACATACTGATGTGTCTGCAGGTG
3' ss Score
8.87
Exon sequences
Seq C1 exon
CTTCAAAACCGCTATGGTGACGTGTTCAGCCTACAGATGGCCTGGAAGCCTATGGTTGTGATCAATGGACTGAAGGCAATGAAGGAAATGCTGTTGACCTGTGGAGAGGACACTGCTGACCGCCCTCCAGTGCCCATCTTTGAGTACCTGGGTGTGAAGCCTGGATCCCAAG
Seq A exon
GTAAAGGGCTGTGTGGACGGTGGATTTGGGTTCAGACGTGTGGGAATAAGCTGAGGAAGCACAGGTTATGAACGTGGGTGGGAATGTGGTCAAGCAATTCACAGCAGAGTCACTGAAGACCAGGAGGACTACCCAGAAGGCATGCGCTGGATTGTGATAGCAAGGTTTTGAGAGGCTCATGGCCAGGACAGAACCCAGAAAAGAGAATTGAAGAGAGAAGGAGACAGTAGAGTTGGGCATTCTTGGTTACATACTGATGTGTCTGCAG
Seq C2 exon
GTGTGGTCCTTGCACCCTACGGGCCCGAGTGGCGAGAGCAGAGGCGATTCTCTGTGTCTACCCTGCGCAACTTTGGCCTGGGCAAGAAATCACTGGAGGACTGGGTGACCAAGGAGGCCAATCACCTCTGTGATGCCTTCACCGCCCAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068086-Cyp2d9:NM_010006:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.4=100)
A:
NA
C2:
PF0006717=p450=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTATGGTGACGTGTTCAG
R:
GAGGTGATTGGCCTCCTTGGT
Band lengths:
292-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: