BtaINT0010142 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MYH2]
Coordinates
chr18:50422367-50423775:-
Coord C1 exon
chr18:50423613-50423775
Coord A exon
chr18:50422517-50423612
Coord C2 exon
chr18:50422367-50422516
Length
1096 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
CTCCCCCGCTGCCTCCTCAGGCG
3' ss Score
9.04
Exon sequences
Seq C1 exon
ATCAGCGAGCACTACGGCCCTGTGTTCACGGTCCACCTGGGGACCCGGCAGATTGTGGTGCTGTGTGGCTATGATGCTGTGAAGGAGGCTCTGGTGGACCAGGCTGAAGAATTCAGTGGGCGAGGCAAGCAGGCTACCTTTGACTGGCTCTTCAAAGGCTATG
Seq A exon
GTGAGGGAGACTGAGGGGAAGGGAGCATGGTCAGACAGACTTCGGGGTCCCCAGCTTTTTTCTCCTGACTGCCTCTGCTATTCCTGTCTCCACTCCTGTGCATTGCTGCCTGCCCCTGCCCTATCTTGTCTTAGCTTCTGCATCTCTGTTTCTCCCTGCTTCTCTCTGCTCCTGTTCCCTTTCACTCGATATCTCTTCTTTCTCTGCATCTCTTAGAGCCTCTTGGGATTTCTGCTTTGGAACCCTGGTCCTCTATCTCCATATGCCTTTTGGTTTTTTTTTCTTTTCAGCTTCTGGGCTTCCCCCGGTTTCTCTCTCCTTCTCTCTCTCTTTCATCTTCCTTTGTCTTAGAATCTCCCATTATCTCTGCCTCAAAATCTCCATGCCTCCATCTCTTAGTAACAGTCTCTCTTTCCCCCCAGGGCCTCTCCGTTTCTTTCTCCCTGTTTTTCTCTCGTCTCTTTGTGTGTGTCTGTTAGTCGCTCAGTTGTGTCCAACTCTTTGTGACCCCATGGACTGTACCCAGCTGGGATCCTCTGTCCATGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTCCTCCAGGGATCTTCCCAACCCAGGGATCGAAACCAGGTCATCTGCATTGCAGGTAGATTCTTTACCATCTGAGCCACCAGGGAAGTCCTTTAGAATTTGCTATGGTTATGTCTAACTCCCAGATCTCCATGCATCTTACTTCCCCTCCTTCCGTCCTCTGTCTCCTCTTCCCCTGAGTGTCTCTGTGTCTCTTGGCATATCTGTCTTGCCTCATTCTTTCCGATTCTGTTCTTTGCACTAGGTCTCTCTTTCTGCATTTCTCTGACTCTGCGTTGTTTGTCTCAGTCTGTCTCTTTACCCCACTTCCCTCCCTCTCCCCTTGCTCTCGCCCACCCTCTATCCCTCCGTCCCCTCTGCACCCTACTCTGGCTCTCTACCCTCCTTTTTCCCCCCTTGCTCTCTCTGTCCACCCCTTCTCTCTCTAGGGAGCCCGGGAGCCCGGGAGCCCGGAGCTGGTCTGGGCCCTGCCTCTCTCTGCCCTCATCCAACTCCCCCGCTGCCTCCTCAG
Seq C2 exon
GCGTGGCGTTCAGCAACGGGGAGCGCGCCAAGCAGCTCCGGCGCTTCTCGATTACAACTCTGCGGGACTTCGGCGTGGGCAAGCGCGGCATCGAAGAGCGCATCCAGGAGGAGGCGGGCTTCCTCATCGAGGCCTTCCGGGGCACTCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047815:ENSBTAT00000065779:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.3=100)
A:
NA
C2:
PF0006717=p450=FE(12.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCGAGCACTACGGCC
R:
CTCGATGAGGAAGCCCGC
Band lengths:
294-1390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development