RnoINT0044379 @ rn6
Intron Retention
Gene
ENSRNOG00000020827 | Cyp2g1
Description
cytochrome P450, family 2, subfamily g, polypeptide 1 [Source:RGD Symbol;Acc:2477]
Coordinates
chr1:83627415-83629304:+
Coord C1 exon
chr1:83627415-83627577
Coord A exon
chr1:83627578-83629154
Coord C2 exon
chr1:83629155-83629304
Length
1577 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
GATTACTGACCTCCTGGCAGGTT
3' ss Score
7.28
Exon sequences
Seq C1 exon
CTCCAGAAAAAGTATGGCTCTGTGTTCACCGTATACTTTGGCCCAAGGCCAGTGGTTATCTTATGTGGACATGAGGCAGTGAAGGAGGCCCTGGTGGACCAGGCAGATGACTTCAGTGGTCGTGGTGAAATGCCTACACTAGAGAAGAACTTTCAAGGTTATG
Seq A exon
GTAAGTAGCATAAATAACAACAGAAATGATTCCCGTGGACTCAGTTCAAGGGTCTCTGATAAGTGACTCATGAGAATCGCCTATACTGACTCCCTTGAGAAGGGTATGACTGCTCTGCTAATTGATGACGTCACACAGTGTGTGCAAGGGCTGCTTTGTTTTTGAACTCCAGCAATTGGACTCTAAACTGCCTGTAGTGCTATTTTTATAATCTCTTTTAATGGAAGACTGTGTATTATCACTTATGTACCCCCCAACCATTCACAGCCAAGCTTAGTTCCTATCTTCCCCTATGTATATGCATATCCACCACAGGAACATGCTCCTATCTACCCATATCCATATGCATATAGAACACAAGCAATTCTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGAGGACTGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCAACACAAGCAATTCTTGTCTAGTGTTACTCATGCGTCCACTCATACTTGCCCAAATTCTTCAAATACAAGAAGACTCACCTCCCTCTTTTCATCTATCTATCTATCATCTATCAATCATCTATCTGTCTTTATATTGATACACAATTCCTCAATTCTACCCATTTATCAATAAATCCACCAAAATATATTCATTATCTTTTGTATGCAAACATCCTACTATTCATATATCTTTCAATGTTCTATTTATCCATGAATCTACCCATAATTTCAGCCATACAATGAATTTTATGTCATTCACACACCTATTAGTCTTTCCATCCAGTCATTCTTCTATCCACCCATCTATGCATTTATCAACCATGTCTTCCAGCCACTATCTGTTCATCTTAACCCCTCTATCCACTAACACTTTACTCAGCCGTCGACTCTTTCAACATCATAGACAAACAGACAGATAGACAGACATTTACCCACCTATTCACCACACTACCCACCATTCTAGTCCAGAGCACTGGATGCTCATCTGGGGGACTTATGTTTGATTAACAGCACTCAAATGGGGCTCAAGGCCATCTGTAGCCCCAGTTTCAGAGAGTGTGATGCCCTCATCTAGCCTCCATCAATCCACTCTTCATTTATATATTTTAAAATGGTCTTATTAAATTTCCAAGCAGTTCACCAATCCACCCATCATGTGATTTCTGCTATAGTCTTCATGTAAGGTTGCTCTTTTTGTGTAGGTACATTGATGCACAGCTGTGAGCTTCTGTGTCCACACATATACATGTTTTTAAAAATTCAACCAATACCCAGAAAATAGAATTAGTATTTCCATTGAAGGGATAATCTATAGTATTCTATCATTATGCCATGCACTCTTGGCATTAAAGATGAAAATAAGTCAATCACAGCTTGCTATCCTGTAAGAAAACTTCCTTGCTGTCCCTGATTATTCCTAGTCTTATTCCCTATTCCTTCAGTCTGGAATATTTCCAAAAGAATCTTGATTTTTCCATTGAGTCTTAAAGGTTGGGCTTTCATAATCTTGTCTACCACAGACTTGAGCATAGAAAGGGGACAGGAGCCTGATTACTGACCTCCTGGCAG
Seq C2 exon
GTTTAGCTCTGTCCAATGGAGAACGATGGAAGATTCTTCGGCGTTTTTCCCTGACTGTCCTTCGAAACTTTGGAATGGGGAAGCGAAGCATTGAGGAGCGGATCCAGGAGGAGGCCGGCTACCTACTGGAGGAACTCCATAAGGTCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020827:ENSRNOT00000028261:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAAAAAGTATGGCTCTGTGT
R:
CCTTGACCTTATGGAGTTCCTC
Band lengths:
312-1889
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]