GgaINT0042929 @ galGal3
Intron Retention
Gene
ENSGALG00000005469 | E1BUU0_CHICK
Description
NA
Coordinates
chr6:17648945-17650240:+
Coord C1 exon
chr6:17648945-17649097
Coord A exon
chr6:17649098-17650089
Coord C2 exon
chr6:17650090-17650240
Length
992 bp
Sequences
Splice sites
5' ss Seq
TGTGTATGA
5' ss Score
-0.92
3' ss Seq
NNNNNNNNNNNNNNNNNNNNNGC
3' ss Score
0
Exon sequences
Seq C1 exon
CTTGCTGAGAAATATGGGCCCGTCTTCTCAGTGCAACTGGGTTCAACTCCAGTAGTGGTGCTATCTGGATATGAGGCGGTGAAAGAAGCCTTGAATTCCACCACATTGGAGCTTCAGCTGCTCGAGATGGTCATAGCTGTTTCCTGCGTATGT
Seq A exon
GTATGATACATAAGGTTATGTATTAATTGTAGCCGCGTTCTAACGTCGACGTACCAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Seq C2 exon
NGCATTATTTTCAGCAACAACGAGGGATGGTTACACGTTCGGCGGTTTGCTCTCAGCACTCTGCGCAACTTTGGGATGGGGAAGAGGAGCATTGAAGAGAGGATCCAGGAGGAAGCTGAGCACTTGCTTGAAGAGATCACAAAAACAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005469:ENSGALT00000040273:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(15.5=100)
A:
NA
C2:
PF0006717=p450=FE(17.1=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGAGAAATATGGGCCCG
R:
CTTTGTTTTTGTGATCTCTTCAAGCA
Band lengths:
302-1294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]