BtaINT0000601 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B8U6]
Coordinates
chr18:50448077-50450227:-
Coord C1 exon
chr18:50450078-50450227
Coord A exon
chr18:50448238-50450077
Coord C2 exon
chr18:50448077-50448237
Length
1840 bp
Sequences
Splice sites
5' ss Seq
GGGGTATGT
5' ss Score
7.48
3' ss Seq
CTCCAACTTCCATTATTCAGGGG
3' ss Score
5.51
Exon sequences
Seq C1 exon
GTGTAGCACTGGCTAATGGAGAACGATGGAGGATTCTCCGACGCTTCTCCCTGACCATTCTTCGGGACTTCGGGATGGGAAAGAGGAGCATTGAGGAGCGGATCCAGGAGGAGGCTGGCTTCCTACTAGTGGAATTACGCAAGACCAGGG
Seq A exon
GTATGTGTGACACCAGCTGGAAGGGTACCAGGGGACTTGGGGGGGGTGGGGGATAGACAGCTCAGTCATGAGAAGATGGGCTTTAGTGGGAGAAAGATTGGGAGTGGGAAAGGATGAAGAAGATGAAGGATTTACTGAGATTTCTAGCCAGATTCCATGTTAAAATTAACATGAAAGACCCTTAGAGATCCCTTGCCCAGGGACTTGAGTCAGTGGATCTTAAGGAGTTTTTGAGCTCCTCGTATCCTGTACAGACTTTGGCAATATGAGCTTATGCCTTTTTGTGGTGGTATGTTTAAATTTATCTATCTAACTAGGTATACATTCACACATACACATACAAAAACACGTAATTTGGGTAAAAACCATATAATGCAAAAATTTGCCACTCTATTTCTGAGGGCATGAGAGGATGAAATGGTTGCATGGCATCACCGATGCAATGGACATGAATGTGGGCCAAGTCCAGGAGATGATGAGGGACAGGAAGGCCTGGTGTGCTGCAGTCCATGGGGTCCCAAAAAGTGGGACATGACCGGCGACCGAACAACAACAAACTGTTCTAAGTGTACAGTTCAGTTGTGTTACATATATTTACATTTTTGTGAAAGATTTTTAAAACTTTTTCAACTTGGGAATCTAAAACATTACACCATTACATTTTTAAAGAGATCCATGATGCACCCAGAAATAAGATCTGGAATGTCTGGGGTCTAATGAAAAAAGACACAGAGGCTGAGAAATACAGAGATGAATAGATTATATACAGAAACAGAGACATATTTCTCTACATTAGACTCCTCCCTTGGGCTCCATGGATGCAAAATGGTCTGCATAAAGACTCTGTACACTCAGGAACCCCTAGAAATTATTTGCAAAGCTAACTGTGATTATATACATTGCTTTAGGGAAATTGTCCCCATACCCACTGGCTTGACCAGCATCTCGTTTTATAGATGGTGCAGCTGAGGCCAGAGGAAGAATTTTATTTTAAATAGTGCAGATGGAATCATTGGTAGAGATAGACCGAATCTAGCCATTCTTTTCTATTTTTTAATGCGCCCCTTACCTCCACTTCTTTCCAAAATTTGTGACTCTCCAGGACAGTTAGCTTCTTTTTTTTCTTCTTTTTTGAATATTTTTGGCTGCACTAGTTCTTCATTTCTGTGCAGGCTGTCTGTAGTTGCAGCGAGCAGGGATCACTCTTCGTTGTGGTGTGCGGGCTTCTCATTGCAGAGCACAGGCTCTTGACGAGCGAGCGGGCTTCAGTAGTTGCAGCGCACAGGATCAGTGGTTGCAGCTCTCAGGCTCTAGAGCACTCAGGCTCAGTAGTTGTGGTGCTCTGGCTTACTGGCTCCTCAGCACATGGAATCTTCCCAGACCAGGGATCGAACCTGTGTCCCCTGCATTGGCAGGCAGATTCTTATCCACTGTACCACAAGGGAAGTCCCAGTACAATTAACTTCTAATAACAAAAAATAAGGATTCAGCTCCACCAGCATCTCTCACATGTTTATTACATGTCAGGCACTGTGCTAAGTATTTTACATGGATAATTAACATTGAATTTTCATGAACCAATGAGGTGGCTATTTTTTTAATCCTCACATATTTTTATGTATTTATTTGGCTGCACCGGGTCTTAGCTGAAGCACACAAGATCTTTAGTGGCAGCATGTGGGATCCAGTTTCCAAACCAGGAATTAAACTCAGGCCCCCTGCACTGGGAGCATGGAGTCTCAGCCACTGGGCCACCAGGGAAGTCCCTCAGGTGCTTATTAAACCAACCTGATGTCACATTCCATGTTCCTACTCATGGCCTCCAACTTCCATTATTCAG
Seq C2 exon
GGGCTCGCATCGAACCTACTTTCTTCCTGAGCCGCACTGTCTCCAACGTCATCAGTTCCGTCGTCTTTGGAAGCCGCTTTGACTATGAGGACCAGCAGTTCCTGAAGTTGCTGCAAATGATCAACCAGAGTTTCATAGAAATGAGCACATCCTGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003272:ENSBTAT00000000871:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGGCTAATGGAGAACGA
R:
GCCCAGGATGTGCTCATTTCT
Band lengths:
302-2142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development