MmuINT0045031 @ mm9
Intron Retention
Gene
ENSMUSG00000049685 | Cyp2g1
Description
cytochrome P450, family 2, subfamily g, polypeptide 1 [Source:MGI Symbol;Acc:MGI:109612]
Coordinates
chr7:27596418-27599310:+
Coord C1 exon
chr7:27596418-27596567
Coord A exon
chr7:27596568-27599149
Coord C2 exon
chr7:27599150-27599310
Length
2582 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGG
5' ss Score
7
3' ss Seq
AAAGTCCATTTCCACCCCAGGAG
3' ss Score
5.46
Exon sequences
Seq C1 exon
GTTTAGCTCTGTCCAATGGAGAACGATGGAAGATTCTTCGGCGTTTTTCCCTGACCGTCCTTCGAAACTTTGGGATGGGGAAGCGGAGCATTGAGGAGCGGATCCAGGAGGAGGCTGGCTACCTACTGGAGGAGCTCCATAAGGTCAAGG
Seq A exon
GTATGGAGATCACATTGGGTGACTGGATGTTTACAGAGAGCTCAGTTATGGGGAGGCTTGTGTTGGTGGGAAAAAGACCTGGAATAGGAAAGAATGAGAGCCATTAAGAGTTTGTAGAGATTTCCTGTAAGATTCCATGTTAAAAATAAACTGAAAGATTCTGAGAGAGAACTTGGCCAGAAATGTTCATCAGCAGATCTCAGAGGTCTGTAACTCAAGAAGCCATACATAATTCTAGTGTGGTGGGTGAGCTTGTGTCTTTTCCTAGATGAAGGATAAAATTTTGCTATGTTATACATGCTTTATTACAATGAAGAAAACAACACAGAACTCCCCGTCTTTACCATTTTTAAAAGTAGGTAGGATTTGTTGGGCTGGAGAGGTGGCTCAGCAATTAAGAGCACTGGCTATTCATCCAGGAGATCAAGAGTTTGATTCCTAGCACCCACATGAGACTCACAACTGTCTGTAATTCCAGTTGAAGGGGATCCAATGCCCTTGTCTGGCCTCTGCAGGTACCAGGCATGCATACAGTACAAAGACATATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGACAGAGAGACAGGACAGGCTTGGGGGGGGAGGGGAGGTCACTATGCAACCAGGCTGGCTTTGAACTTGTTTCAGTTAAAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACACAGACACAGTCACACACATTTTCTTCAGGTAACAAATCTCTCAAATATTTTATTACGTTAATTTTTTGCAAAATTACAATATATTAATCATATTCTTTCCCATCCCAACTCTTTTCAGATCATCCCCATCTCCCTACCCACCCAGCCTCATCACTTCCTCTCAAAATAAAATAAAACAGCAAAAATCAAAACACTTCTACCAGTAAAGTTATTTGCAATTGAGACCTGCTGTAAAGGGAAAACAAGTTTTCTCCAAGATAGTGTCAATGGATATATCAACCACACTCCAGAGAAGTCCTGACACCCAGGAGTAGTGATGAACACAAGAGACTCTGGGTTTGTTGTTGCTGTTCTTGTGGTTTATCTGTGATTTTTGTTTTATTACAGTTTTTAAAGGTGTCTACTTCCCAGTGTAAAATAAGCTATGGAGCCAATAAAAGTCAAAAGAGAAAAGACAAAGGTTGAGAAATACAGAAACAAGTAGATAAGAGACATAGACACATACCTCTTTAAACCCTTGTCTGGACTCTGTAGACAAATAAGGAATCTACTCATGGCTTTGAACGGCCTTGTACCTCCAGACGCAATCTGCTATGGTGTACATCAAGAATGTATATGCATGGTTCTGGAGAAATTGACTCCACACCATTTACTTGATAAGCATCCAATGTTATAGATAATACATCTGAGACCTAGTGAAATATTTTCTTTTTCATATATATTTATGTTTGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTCACGTGTATGGATGCACTTGTATGCACATGTACTTGCACATGTGTTTGGAGGCCAGAGGTTGACATCAGATGTATTCCTTAATCCTTCCTACTTCTTTTTACTGATTTATTCGTAGATTATCGCTGTACCCAGAGCCCATCAATACCACAAATCTAGCTAGCCAGCTTTCCTCAGAGGACTTCTGACTCCATCTCTCAAGTGCTAAATCAGAAACCGGTTGCTACACTTTTTAAAAAGGTCCACCTTCTTATTTGGGTGCTCAAGGTTCTAACTCCAATCTAAAAGGTTATGAAGCAAATGAATTGTCGTTTTCCCCAGCCCCTGGAAGAATTTTTCAATAAGCTAAATGGATTTTTTTTAGTAGACCTCGACTAAATTCAGGGTTTCTTTTTAAAATTATGTTATTGCTATTTTATGAGTACAGATGTTTCGCATGCACATAAGCCTGTGCACCATATGCATGCCTGATGTGCCAGAAGCCAGAAGATTCTTCAAACTGGAGTTACAGATGGTTCTGAGCTGCTGTGTGGGTGCTGGGGATTACAACCTGGGTCCTTTGCAAGAGCAGTCAGTGCTCTTAACCACAGAGCAGCCTCTTCAGCTCCTCAGATGTGTGTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTCCCAAATGTGTCCTCTGTTACTTTCCATCGACCACATACTTAGGTAACAGTGACAGAAATATCATGTTGAACTTCTCTACTATTCCTTGAGTGCTTATTCCAGACTGGAAGCCATGCCAGGCATTTTACATGCAATTATCATATCGAATGCTCACAGATCAACTGGAAGATTTCCAAACCAGGTTGCAGTTTGGAAAACCTAGACTCAGATATGATAATGAGGCACTCATACATATGGATAGGCAGCAGACTCAGAGCTCTGTGCCAGCACTGTGTAATTGCCTGCCCTACCTCACTTGTTTGTCTCCAACAAAGTCCATTTCCACCCCAG
Seq C2 exon
GAGCTCCCATAGATCCCACCTTATACCTGAGCCGCACTGTGTCCAACGTCATCTGTTCCGTGGTCTTCGGAAAACGCTTCGACTATCAGGACCAGCGTTTCCAGAGCCTCATGAGGATGATCAATGAGAGCTTTGTGGAGATGAGCAAGCCCTGGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049685-Cyp2g1:NM_013809:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: