BtaINT0000795 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BKN3]
Coordinates
chr13:11171392-11176778:+
Coord C1 exon
chr13:11171392-11171485
Coord A exon
chr13:11171486-11176487
Coord C2 exon
chr13:11176488-11176778
Length
5002 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
GTATTGTTTTCTTCTTGCAGATT
3' ss Score
11.48
Exon sequences
Seq C1 exon
ACTTGAAATTGAAAATGCCGAGTTACAAACTACAGTCAAAAAGCAAGTGGGCAAAATTGAACACCTTCAGAAAAACCTGTTAAGTACAAGATTG
Seq A exon
GTAAGTCAGCTTCTTAATTTCTGTCATACTGAGGAAGAATTTTAATTTTTTTACTAGTAATATATGACAATATTTTGACAGTGTGACAAATGTCATTGATTAAAGAGTTTATTGTATTTTTACAGATATTGTTTGCTACTGGTAGCATAATTCCTCTTTATAGAAGAAGTGGACTGAATTCATAAAATTAATGATTTTTGTAGTAAGATTTTAATTTAAAACATTCTGAGAATCCAGTTGAAAAGCAATATTTTATATAGACCACATTTTGTTTCTTTATTCCTCTGTCAATGAAATCAGGGTTTTTCCACTTTCTGGCTATTGTCAATAATGCTGCCATGAACATTGGTACACAAATATCTGTTTGAGTCTGGAAATTTTAGCAATGATTTGATTGAGAATTCTGAATTTCTCTTGTAATCCAAACCCTTCTGTGAAATTTTAGAAAATGAATCATTTTTAATATTGCAGTTTGTTCTCTTCACCAGGAATGAATACTATGTCTCTATAGAACAGTTCTTTCTCAAAGAATACATTTTTTCCTTTGTTGATTTTTTTTTTTAAAGAGGTGGGGTTTGCATGGGATTTTTTTCAAAGATTATTTTAGTAAGATGTGATTTAACAAAACCTGGAATATCTTGAACCACTGATGAAAATTAGAGCATCTTTAGAAAGTAAAATGTAAATATAGCCACACTTTAAAAAAGTTTCATTAGCATTTAGTATTTTATGTGTCAGTTCAGTTGCTCAGTTGTGTCCAACTCTGCAAACCGATGGCCTGCAGCAAGCCAGGCTTCCCTGTCCATCGCCAGCTCCTGGAGCCTGCTCAAACTCATGTCCATCGAGTCAGTGATGCCATCCAACCATCTCATCCTCTGACATCCCCTTCTCCTCATGCCTTCAATCTTTCCCAGCATCAGGGTCTTTTCCAATGAGTCAGTTCTTCGCATCAGGTGGTCAAAGTATTGGAGCTTCAGCTTCAGGATCAGTCACATGAATATTCAGAACCGATTTCCTCTAGGATTGACTGGTTGGATCTCCTTGCAGTCCCAGAGACTCTCAAGAGTCTTCGCCAACACCACAGTTCAAAAGCATCAATTCTTCGGTGCTCGCCTTTCTTGATGGTCCAACTCACATATCCATCCGTGATTACTGGAAAAACCATAGCTTTGACTAGACAGACCTTTGTCGGCAAAGTAATATCTCTGCTTTTAATATGCTGTGTAGGTGGGTTATAACTTTTCTTCCGAGGAGGAGGCGTCTTTTAATTTCATGGGTACAGTCACCATCTGCAGTGATTTTGGTGCTCCCCCAAATAGTCTGTCACTGTTTCCATTGTTCTCCCATCTATCTGCCATGAACTGATGGGACTGGATACCATGATCTTAGTTTCCTCAATGTTGATTTTTAAGCCAGGTTTTTCACTCTCCTCTTTCCCTTTCTTCAAGAGGATCTTTAGATCCTCTTCGCTTTCTGCCATAAGGGTGGTGTCATCTACATATGACATTGCCGGAGAAGGCAATGGTAACCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGATGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCACTACGAGTCGGACAAGACTGAGTGACTTCATTTTTACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGAGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCAGACACAACTGAAGTGACTTAGCAGCTGCACCTTGGGCTTCCTGTGAAACTTTGCAGGATGACACCTTTAACATTCTTTTGCTCTTAAGATCCTTAAAGGAATCTGAGGCACCACCTTAAGTCTTTCCAGGGTCTTACACTTACAGTCTACAGGTTTTACCTTTAGACCATGTTTTCCTGGCAGCACCCTAGATTTGATCTTAGCCCAGAAGCCATTTCTGTCCTTTAGCATCATGTGACAGTTGGGCATGTGGAGATGCTGTAAAGGGGATACAGTATTGAACCCAGTGAGTCCTGGTTCCTTTATATTGAATAATACTTTTTAATTTTTCTTAGGCTTCCCAGGTGGCTCAGATAGTAAAGTGTCTGCCTGCAATGCAGGAGACCTGGGTTCAATCCTGGGGTCAGGAAGATCCCCTGGAGAAGGAAATGGCAATCCACTCTTGCCTGGAAAATGCCATGGGCGGAGGAGCCTGGTAGACTACAGTCCATGGGGTAGCAAAGAGTCGGACACGACTGAGCGACTTCACTTTCACTTTCTTTTTAAATTTTTCTGATAGGTTATCCCTCTCATTGATTTACTTTCAGCTGCTTCATGGCAAGAGCCTCTGCCCCCCATGTTTCAGTGTCAGTTTCTTCTCTTGCCTAGAAGCTGACACCTGCAGCATCTTCAAGGACCATCAGGCTTCTGTGTACAATGTCATGAAGCCCATTGGGTTTTCATTTCTTTCTCTGCATCCATTCGAGTGCCACTTACCTCCGGCTTCAAAGGCATTCTCACATGTTTCAGTTCTTTTTTAATTGCAGTACCTCATTTGGGGGCATCACCGACTTGATGGACACAAGTTTGAGCAAGCTCTGGGAGTTGATGGTGGACAGGGAAGCCTGGTGTGCTGCAGTCCATGGGGTCACAAAGAGTCAGATTTGACTGAGCGACTAAACTGAACCTCATTTTTAATATCAGTATCTGTGCCAGTTATTTATTGTTAACAAATTGCATTAGAAACCACCTCAAAGCCTAGTGACTCAAAACAGCATTTCCTTTGTTCACAAGTCTGCCTTGGGGCAAGTCTCAGTGAGTGAGCCCAGCTCATTTCTTCTCCAGTCGCATCAGCCAGGATGTCATGAAGGTGGGGACCAGTCATCTGAAGACTTGTTCATGCACACGTCTGGCAGTTAGAGCTGGCTTTTGGAGGGGACATTAGGTGGGGTGGTCAGTGGGGACACTGACATGTGCTCAGTATGTGGCCTTGCTTCTTCACAGCATGTTGCCTGATTCTAAGAGTTGGCTTCCCCACAGAGCAAAATTCAGAAGCTATTTAGCTTTAAAACTCACACAGCAGTTTCCCCAGACTCTGTCCAGGAGTGCCAGGAGCCGGCATATTGTATATTGAGTGCATATTGCATATTGAGTGCAGCACTTTTCAGGATCTGGAATAGCTCAACTGGAATTCTATCACTGCCGGTAGCCAGCATGAGGAACTCCGCCCATGACAAAGGTCATGAGGAAGGAGGCTCGGCATACGCAAAGGCGGGATCGAGCTTCAGGAGTCCCCCTGGAAATTCTCGAGCATCTACCCCCAAAACCAGAGTCTGCCTACTTTCTGCTTTGTGCTTTCACCTACACCTCTGACTTTACAGGAGGCTGTCCCCCACTACCTCTCTCTGAAAAAAGAGTTAGCTTACAGTTCCAGTTAATAATTCCTGGGTGTGACAGTGTTTAACTTACAAACTCCTTTGGAAATCCTCTAGCCTGCCTGAATAGGTTTTTCCGGCCACATGTGATTGTTCAGAGCCTCCCAACTGTGAGAGGCAGGAGATGTTCTAAACTGTCTAAACACAGATTCTTTTGAGTAGTTAAAAGATTGATAAGAAATTGTATTGGTGAAGGGATTTTCACTTGTTGGGCCAAGGTTTGCTGCTAAGTTTCCATATCCCTTACCTGCTGTGTCCCTGGCAGTGTATTGATTAATATAATTGGTGTAAGTAGTAGCTTTAATGTTTGTAACCTGGGACCCTTGAGTTAATTCTTTTTCTTGTTATAGCCCACCACACCTTTGCTCTGTAGGAATGCAGCTTTATCTAATGTTTTTGGAGGGTGGCTCCTGACCAATCACCTTTAGAGAAAAATAAGTTTTCTGAAGAAAGGGTCTTAAAATGTTAACAGGCCTCCGGGCCAGAAGATGATGCAAATCACCTAAGCTTTTGCATATGATAAGTTTGCAGGAAGAAAGCCTGGCTTGCTGCATGACTCTACCCCTTCCCCCATTATCCTCTATGTATAACTTAAGGTATAAAAACTACTTTGGAAAATAAAGTGCAGGCCTTGTTCACCAAAACTTGGTCTCACCATGTTGTTCTTTCTCTTACCTTCTGGCTGAATTATTCAGCCTCTTTTCTCCACTGAATTTCCTCACTGAGCTATCCTTATTTCAGCCTCTTTTCTCCACTGAATTTCCTCACTGAGCTATCCTCATTCTATTACTCTTTATATCTTTGATAAATATTTAAATAAATAGGTCGCCTATGCCATCTCTCCTTTGAATACCCTGGATCAGCCGGGGCTGGACCCCGGCACAGGAGGAATCAGTTACTAGGACTAGCACATACTTGAGGAGAGGGAATTTCATGAGCAAAGTGTCAAAGAATTTGTAGAAGAATGAGGCATTTTTTGTTGTTGTTCAGAAAAATGTATGGATCATCTCACTAAACTCTTAGGAGATGGGATTTCTTTAACCCTGTGAATCATTTTTCTTTGGAATGCAATTCAAATTAGCAAAAACTGTTTGTAGTTCAGAAAAAGGCTTATTGGATTAGAATCCATATTTAGTCCTTAGAGTCTTATTTTCACAATCTTCTTTTGGGAGGCATTTATTAACTCAGCCCTAGATAACTCAATACAGGATACCTCAAACTTCTTTAAAAACCGTGGGACAAGCTGCGGGAAGGAGTAAGAGACATTCTACTAAGAGGTGACTTGCAGTCATTCTATGGAGGAAAGATAGAAAAGTATTACTGTAGAACAGTAAAAGAGTGTCAAATCAAGTGCAAATGTTTTTAGACTAAGATGATAGTGAAGAATATATTTTGTGACTCTTGGTGGTTTGAACTTCTTTCTTGATTTTTTGAGTTATTCCAGGTCCTACATTCTACAATACAGATACCATCATATGAATTTGATCCTCGGTTTGAGTTAGGCGGTACTCAGTCCACTTCCCTCAGAACCAAATGGTATTGTTTTCTTCTTGCAG
Seq C2 exon
ATTGATCATCTTCCAGCAGAGCTAGAAACTGCATGTTCACAATGTCTGCACCTGGATGCAAAAAATCGAGTTCTTCAACAGGAGTTATTATCAATGAAAGGATGGCAGAGGAAATGTGAGAAACTAGAGAAAGAGAACAAGAAGTTGCAGCAAGAGGTAGTGAAACTCAAAACTCATATAGAACTGAATATGGTAGAACACACTCAAGTTGAGCAGTATAAATGGGAGATTGAAGAAAGAGCAAGACAGGATCTCATAGAGAAATTAAAAGAAGTCAACCTATTTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004354:ENSBTAT00000011189:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development