BtaINT0001012 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr16:77493884-77497754:-
Coord C1 exon
chr16:77497572-77497754
Coord A exon
chr16:77493938-77497571
Coord C2 exon
chr16:77493884-77493937
Length
3634 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
ATTTTTTTCCTTTTTTCTAGGAC
3' ss Score
12.34
Exon sequences
Seq C1 exon
TGGTCAAATGTGTATATCCAGCCATTGAACATGGAACGATAGTCTCAGGATTTGGACCAAAATATTACTACAAAGCGACGGTTGTACTTAAATGCAATGAGGGTTTTAACCTTTATGGCAACAGTGTAGTTGTCTGTGGTGAGAACAGTACTTGGGAGCCCGAGCTACCAAAGTGTATTAAAG
Seq A exon
GTAAAAGTACTATCTTCCTTTTGTTTTTGTTCTTTATGTCTTTCACATTAAATATCAATGATGCAAGAAAAACTGAAGAGAAACAATGTTCATATTTAACTGTGTTATATTCATTTCTCTGATAGTTGTATGACTTCAAATTCACAAGAAATCCGCTGCAGCGATTTTCTGTCTTTGTAGGGTCTTAGCATTTCACGTACATAACACAGGTATATAAATGTCTCTTGCTAGGCATTCTTAAATGTAAAAATGGATAGCAGTCATTTTTCAGGGTAAACTGAAGCGTAGGGAGTTTTACCTAAATAAGTCAAGAATGAAAGGCATAATTCATGTGAATGAAAAGACAGTATTAATGCCCAGATTTTTGATTCAGTCTCCATTATTTTGTTTTCTAGTGTCGATTCCTCCCAGCACCCAGTCTCCAATTCCCAGTACCCAACCTCCAGTTCCCAGTGTCTCAGGTTTAGTAACTTCCTACATATATTTTTTTCAAAAATCTTTTAAATTCCTGGTGAAAATGCCAGTAGTAACTCCCAAATGTTTGATCCTGTCTGCGTTTTTTTTTTTTTTTTCCAGTGTCGACTCGCAGCACCCAACATCCAGTTCCCAGTGTCTCAGGTTTAGTAACTTCCTACATATATTTTTTCAAAAATCTTTTAAATTCCTGGTGAAAATGCCAGTAGTAACTCCCAAATGTTTGATCCTATCTGCGTTTTTTTTTTTCCCCCCAGTGTCGACTCGCAGCACCCAACATCCAATTCCCAATGTCTCAGGTTTAGTAACTTCCTGCTTATATATTTCAAAATCCTTTACATTCTTTTGATCTTTTTTTCAAAGTCTTTTAAATTCCAATGATTTATACTCATTTATCAATTTTAGTAATAAAATATTCACAGCCTTTTTAGTTCTTAGATTGAGTGATTCTAAAATTATGTGCAGTCTGCAGATACAAGCAGATAGCAAGTTAAGTAAACTTTAATATGTTTACTTATGTGTAAAATGATTTCAAACCTTCCTTACTTGAGTTCAGTTCAGTTGCTCAGTTGTGTCCGACTTTTTGCGACCCCATGGACTGTAGCACGCCAGGTCTCCCTGTCCATCACCAACTTCCGGAGTTTACTCAAACTCATGTCCATTGAGTCGGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGTGTCTTTTCCAGTGAGTCAACTCTTTGCATGAGGTGGCCAAAGTATTGGAGTTTCAGCTTTAGCATCAGTCCTTCCAATGAATACCCAGGACTGATCTCCTTTAGGATGGACTGGTTGGAGGTCCTTGCAGTCCAAGGACTCTCAAGAGCCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCGGCTTCCTTACTTAGTGACAGTAAATTTAAAGTGGGATTCATTTAAAGCACTTAGCATAGCCCCTGGTATCTATAAAGCTCTTAAAAGGCAGCTTGTACCAGTTACACTCAGATTAATATTAGTGTAGAGGAAGGTCCACAGGTTCTGTTTTTTAGCATGTATGTTTTCTGTGTCATCAACACGGATGATTTATTCATTTTAAAAGTGATCTCTCGACACCTGTACAGGGTGTCTTCTGGGTCCAGGACTGTTTCCTTTCCCAGGTTGACCAGCTTGGTTCTTTTTTATAAACTGGGAGACTACCATTGTCTCTAGAATGAGACTAGTATTTCTACCACCTCCGTCACTCCCCCACTCCTAACAATTATTGTTTTTCTCTTTACTGAGGATTTTTTGTTTGTTTTGGATGTTTTTGTTTTTGTTTTTTGAGGGGGAAAGGGGGAATTGGCAACAGAAAGTAAGTGGTATAACAACTAAAAGGCAGAAAAAGCCCTTGTTTATTGGAATGAAATGGAGGAATTCTAGCAGGGGCTGCTGATCAGCTCCTCTGCCTGAGACTTGAATGAGTATTTTGATATGTTGGAGGGAATTGTTTTCCTAAGTTCAGGGCTGCTATCTCTGGCTTGTATTTAGTTGCCGCAGAAGCTAGAGACTAGAGGAAGGGTGGAAAGAGCATCAGTCTGGGCAGACTTTTAAAGAGTTGACATAAAGGAAAGTGAAAGTCAAGTCGCTCAGTCGTGTCCGACTCTTTGCGACCCCGTAGACTGTAGCCCACCAGGCTCCTCCGTCCATGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCAGGAGATCTTCCCGACCCAGGGATCGAACCCAGGTCTCCTGCACTGCAGGCAGACGCTTTAACCTCTGCGCCCCAGGGAAGAGTTGACATAAGCATTTCATAAAGGATTTATAAAGCACTGATACAGTTTAAAAGAAGAGTTCTGAGGACAGATGTACAGTGAAGATAAAACTATGGATTATTTTAAAATATCAAAAATCAAAATTCCTCATGAGACTGTCAATCATTTTCTGTCATCAGTTAGTATGAAAAACATCATTAAGCAACATATAACGGTGGTCAAGTAGATCTGATATTGCAAATATGAAAAACTGTAGGCAAAATACTAACTGGAGAAGGATACAAGTTATGCAATAGGAAACTATATGGACAGTATTTTTTTAAAGAACCATATGTTTATTCTGAGCACGTTTTTTTTATGGTTTGTCATTAGTTAACTTCTAGGATTTCCACTGTATACAAAGGCACAGGGAACATTCCCGTGCAACATTCTTGTGCACTTCGGTAAACATGTGTTTAGGTTAGCTTTACAGAAGTAGAATTGCAAAATTTAGGGAGTACATGTATTTTTCATTTTGAGAAATAATTCATTTTGAGAATCTTTATAAAAAATCAAATACCAGATTTAAATCCATAATTTTGTATGGATAAGGCTGGAGAATTGAATCTAATTTTCCATTCCAGATTCCAAGCCCACTTCTCCAACCATGACTTCAGGACTAAGTCATCCAGGTTCAGTGGCTGAGCTTTTTTTCCATCTACACTTATTTATTCATGTCCTTCTTTAAATTGTTCTACATAGCTTCTGAAATTTCTTCAGTGTTTGTGGGTTGTACCTTCTTTTTTCATTCTGATTTTGTTAATTGGGGCCGACTTTTTCTTGATGAGTGTGGCTATGTGGCTGTAAACTTCCCTCTTAAAACTGCTTTTTGCTGCATCCCATAGATTTTGGATTTGTTTTCTTGTTTTCGTTTTCTCCAGATATTTAAAAACTTTCTTCCTTGATTCAATCAGTGATCCATTCTTGTTTAGTAGCATATTGTTTAGCCTCCACAAATGTGCTTTTCTGTTTTAGTTTTAAGTATAATCACATCGAATCCATAGGGTTATTCTGACACCACACTAATGATAAATTTGCTTGCTGTACCACAGAATATTGTCCTAGGAAATGTTACTGGACAAGAAGTAGAATGCTTTGGTATTGAATATAAATTTATAATATTTTGATACTACTTTTAATGACAAACATTAATGTAGTTTATATAAGGAGAATGAAATTATAAGAGTTTTTGTACAAAGTGAAAAAAATCAAAACCTGTGAACTTAGAGGACATTAAGCTCTATTGTTTTTTCTTTTTTTTTTTTAACTTGCATTTTTTTCCTTTTTTCTAG
Seq C2 exon
GACATCCCCCCCGTCCTACTGATGCATCACCCCCTAACGGTGCTGAGGGTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005397:ENSBTAT00000007108:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=NA C2=0.484
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=90.3),PF0248011=Herpes_gE=PU(12.3=16.1)
A:
NA
C2:
PF0248011=Herpes_gE=FE(22.2=100),PF041569=IncA=PU(8.3=26.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development