BtaINT0001038 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N4Y6]
Coordinates
chr25:35071453-35072759:+
Coord C1 exon
chr25:35071453-35071514
Coord A exon
chr25:35071515-35072629
Coord C2 exon
chr25:35072630-35072759
Length
1115 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
GCTGAGCTGAGGCCCCTCAGGTT
3' ss Score
-3.15
Exon sequences
Seq C1 exon
CCGGGATGATGTCATTGGGAAGGTCTGCCTTACCAGGGACACGCTGGCCGCTCACCCTAAGG
Seq A exon
GTAAGACCCCAGGAGGGAGGCCATGCCGGCTTCTCGTCCCCTGCCCTCCCCCACACTGGTCTGCCCAGTCCCCAGCCCATCCCCCGCTCCAAGACCTTCCTCTGGGATCCTTCAGTCCCCTGTGCTCAGGAAAGCCATCATGGGCCTCCCCAGAAGGGCCCATGGCCCTCTCCATTGCCTATTCCCTGGTCTCTGCCCTGTAGCTGGGACCATTCTGCCCCCCTGGTTGGGCCCACATCCCCCGGGGGGATGAGGGGCTGCTAGTGAGATCTGAGATCTCTGCACGCAGAGGAAGGGGCCTCTTTATGCTCCGTTGTCAAGGGGTGGGGTCACCTCGTCGCAGTCTGGCTGGCTGTGTGCCCCACTGGGTCTCCTCGGCCTGGTCCCCAGTGTCCTCAGTCGAGGGGGTTGGCCTGGGGCAGGGCGTGGCTAGAGAGCCCCTGGAGGATTCGGGGGACACTGACAGTGTTTGGAGGGGTCAGCCCTGCCCCAGCCTGGCCATGTGACCTGGTGCCGCCTCCTCCAGGCTGAGTCACCATCTGCCAGTGGAGGTTCAGACCAGGAGTTCAGAGGTGCTTCAGGCTCTGCTGGCCTGAGCCCCCGTGACTCCTGAGGGGCCTCCCTGGCACACACCTGCTCCCATCCCTGAGGCTGGGGCAGGCCTGGCACGGGGGGAGGGCCACTGCTGACTCACGGGGCCTCTTGGCCCCTGCCAGGCCTGAGTCCTCTCCTGCTTGTGGCCCCAGCTGGCCACTCAGGGGCCATTGGCCCCCGTGATGCCATCCCCTTGTCGCACCCCCATCTGTCGCGTCCTCCTCCCGGCAGCCCACTCTCCCTGTCTCTTAAGATGGGGAAACTGAGGCAGAGAGGCCAGTCCCAGGATGGGGCAAGGGCAGGGCCACCAGATGCAGCTTGGCACCAGGCTGGACTTGGACTTTGAGCCCACTGCTGTTCAGCTCCTGACCCTCGGTGTCCCCACCTGCCACTGGGGGCAGCAGCCCCGGTCTCCCGGGAGCTTGAGAGGACCCCAAGGCAATCGTGCAGGGGCCCGGGGCGTTGGGCGGGGGTTGCTGCAGGAGAAGGGCCAGGCCCCTAGCTGAGCTGAGGCCCCTCAG
Seq C2 exon
GTTTCAGTGGGTGGGCCCACCTGACCGAGGTCGACCCTGATGAGGAGGTGCAAGGTGAGATCCACCTGCGGCTGGAGGTGGTGCCAGGGACCCGGGCCTGCAGGCTGCGCTGCTCTGTGCTGGAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005448:ENSBTAT00000007169:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(11.0=40.9)
A:
NA
C2:
PF0016825=C2=PU(9.8=18.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGATGATGTCATTGGGAA
R:
CTGGCCTCCAGCACAGAGC
Band lengths:
192-1307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]