RnoINT0124472 @ rn6
Intron Retention
Gene
ENSRNOG00000001431 | Rasa4
Description
RAS p21 protein activator 4 [Source:RGD Symbol;Acc:1565457]
Coordinates
chr12:23615549-23616850:-
Coord C1 exon
chr12:23616789-23616850
Coord A exon
chr12:23615679-23616788
Coord C2 exon
chr12:23615549-23615678
Length
1110 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
GCTGACATGAAGCCCTGCAGGAT
3' ss Score
-1.86
Exon sequences
Seq C1 exon
CCGGGACGATGTGATCGGGAAGGTCTGCCTCACAAGGGATGAGCTAACCTCTCACCCAAAGG
Seq A exon
GTAAGATGCTCCACTCCTCTGCTGGTCTACTTAGCACCCAATGTAGCTCCTATTTTCCACCGGGTCCCTCCATATGGGTCCCAAGCCCTAGAGAATTGGCCTGATGCTGGTTCAGCCTGCAGGACCACTTGATTATTTCCAGAATGCACACTGAATTTTAGAGGTTTCAGCCCTGCCCAGGTCTCACTGTTTGACTGCCCAGTCTTGACCTCTGGACTTTCCATTCAAGTCCAGGAGTTCATGGGTCCTTTGGGCTCTGCCAGCCGAGCCTCTGACTCGTCCCATGGCTTCCTGGGGCACACACCTGTTCCTGTCTGTAAGACCGGGAGTGGGGGTGAGGGGATGATAGACTCTGCTGACTCACGGGACCTCCTGACATGGCCAGGCTGGTGGCCTCTCTTGTGACAGCCTGAGCTGTCCAGGTGCCCCTGGTACATTTCCCTGTGGTGAATCCCTTATAGGTCCCACATCTGGTCTTCAGACTATCATTCCCGTAGCCTAGAGGGAGTCACTGTTCTCTTGTTTTAAGGTGGGAAAACTGAGGAGATTTCCACAACCAGTGGGGGGTCAGGAGCACGTAATCAAAGTCTGGAACGGTAAAGAAGGTCTAGGAGCTGTGTTTGCGCATTCCTGTAATTCTGGCATTGGGGAGATGGAGAAGGCAGAAGGATCAGGAGTGTGAGGTTATCCTCAGCTACAAAGTGTGAATGAGGCCAGCCTGGGCTACATGAGACCCTGCTTTATAGTGAAAAAAAAATAGGGGACTAGGGAGGTGACTTAGCAAGGAAGAGCGCTTGTCATGAAAGCAAGAGGACCGGAGTTCAAATCCCCTGGCATGACTACTTGTGCCTATAACTCCAGCATGGTCAGGAAAAGACAGGAAGATCCTGAGAACCCCCTGGCCGGTCAGCCCTAGCTCAAAAGGCCATAACCCCACACAATCAATAAACTAATATCTCAGCGCTTCAAACTGCTGCCTGGCCCCTGAGCCTCAGTTTCCCCTTCCATCACCAGGAATCTCCAGAGGACTTCAGGGGGCTGATGGGGAAGCGATGGGGTGGCAGGTGGGTCTGTGGGTGAGGGGTGTTTGGCTGACATGAAGCCCTGCAG
Seq C2 exon
GATTCATCGGATGGACCCACCTGGTGGAGGTGGACCCGAACGAGGAGGTGCAGGGTGAGATCCACCTGCGTCTGGAGGTGGTGCCAGGGCTCCACGCCAGCCGGCTGCGCTGCTCTGTGCTTGAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001431:ENSRNOT00000001943:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(11.0=40.9)
A:
NA
C2:
PF0016825=C2=PU(9.8=18.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGATCGGGAAGGTCTGC
R:
CTGGCCTCAAGCACAGAGC
Band lengths:
185-1295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]