BtaINT0001063 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr2:31678836-31682792:+
Coord C1 exon
chr2:31678836-31678910
Coord A exon
chr2:31678911-31682586
Coord C2 exon
chr2:31682587-31682792
Length
3676 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
ATATCTTCATTTCTTTGTAGCTG
3' ss Score
8.05
Exon sequences
Seq C1 exon
CCACGCAGTCAGTACCTGCAGTTCCTACCGACAGTGGTGTAGAAGTGAGCTCTTCTGAGGGCCTGTCCAGCCCAG
Seq A exon
GTATGACACCTCTGTTCCTCATCTTGTAACCACTGAGAAAGAACTTCCAGTGAGTTGGGGAATGAAGTTAGAAGCTACTTGTAATGCTCTGTACATGAAGGAGATACAGATACTTTGACTCCATTTCCCACCAGGGAGGGGCTTCCCTGGTAGCTCAGTTGATCGAGTCTGCCCGCAGTGCGCAAGATATGGGTTCAGTCTCTAGTCGGGAAGATCAGAGAAGGAAATGGCAACTCATTCCAGTATCCTTACCTGGAAAATTCCATGGACAGAGGAGCCTGGTGGCTATAGTCCATGGGGTCACAGAGAATTGGATATGACTGAGTGGCTAACACCCACATTATACAGTATGAAATGAAAAATATTCCCCTCCTGAGCTCAGAGCATGAAATACAGCAATTAGAATTTTAATTCTGTGATGGTGACAAATATAATTTCTTCCAAAATGCTTTTCGGTCTCTGTTTGCTTAATTCTATTTTCTAAGTGCCATCACCACAGATTTTACTTCTTTGGCAGAAGCCTCCCTCGGCCCTGGGAATGAACAGTGCGCTGTGTCCCAGCTGCCCGCCGAAGCCCCTGTCTCGGGGTGCCCTGGAACGCCTGAGGCTGCTGCCACATCTCTGCCCTGTAAGTTACCTGGCCTTTCCTCAGTGGCTAAAAATGAAAGTGAAAATAATTCATGTAACAACCACAATAGTGTCGGATACAGTGAGCATTTTTCTGAATAAATGAATTTTTTTTTAAAGTTCACAAGAATAGCTTTAATCTAATACAATTCTGTTTTAGCAAAGGGTAGTGTTTGTCAAACAATTTTGCCCTTTTGACTATTTCCAGGAAAAATATACAAGATGTCCCAAAAGGCTTAGTGAAATTTTAAGCTTTAATAACATAAGATGCCACAAACTATGTTTATTTGAATTTCTTTTATACAATTGAATTTTGTGAATTTTAAATATTTTAAATTTTATTTTTGTTTCAATTTTGTAACCTTTAGAAGGATTGAAAAAATTATGATAAATATATTCAAATTATAGAAGTAAATTTCAATAATTACACTTTCAAATGATATTTTTGTAAATTTTTTTTTAAAACACACTTTGGGAGTTGTTGTATCTTCAAACTACACTAAAGGTTTGGATATTCTGTTCTTTGAAAGTGAATTGTCTTCCCTTAGAATATATGAAGCTGAAATATGATAGTTGCGATATAACATCTGTGAAAAGTATTCATTGTTCACAGCCCCCACCTCATTTTGTTATAATCGTTGTTATTGTTGTAGTTCTAAAATTTGGTCATTTGACCATAGTATGAGTAAACAAACTTGATTTAATATTTTTTAAAGCTTGGGAAAATCTGTACTAATCAAATAACAAAGTGTGAAAGTGCTCTTGGATGATTAGAATTTTTTTTAAAAGAATCACAGCCTTTTCTAAGACTTTTAATGACAGGAATGAATTTATTTAAGAAAGCCTACATAATGCTTGGGCTTCCCAAGTAGCACAACGGTGAATCTGCCTGCCAGTGTAGGAGATGCAGGGTTCAATCCCTGGGTTGGGAAGATCCCCTGGAGTAGCAAATGGCAACTCACTCCAGTATTCTTGCCTGGTGAATTCTATGGACAGAGGAGCCTGGTGGGCTACAGTTCATGGGCTCACAAAAAGTCAGACACAACTGAGCATGCACACATATAATGCTTATAACTACTAAGTATAAGTAGCTCAGACGGTAAAGCATCTGCCTACAATGCGGGAGACCTGGGTTCCATCCCTGGGTCGGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAAAATCCCATGGACTGAGGAGCCTGGTAGGCTACAGTCCATGGGGTAGCAAAGAGTTGGACACGACTGAACGACTTCACTTCATAAAACCCCAGAAAAATAATTTGAAAAGACTTTTGAAACATGTGACTCATTCTTCATACTTTAGGACCAGTTTCTCAGTGAGGACCTCATGCTTAAAATTGTGTATCTATATAAAATACTTGTGATTGTGAAGAGAGAAATAGGGAGAAAGATCAATAATTTGCTAAATGTTACCTCGGTTGATTTCAAAAGAGCTTAGCATATATCAAGGAGCCATCTATAAAACAACTTGCATCTAAACCGTAATGGCCATTAAGTTTTCCTGGATACATTTTTAAAATTATGTAAATACGTTCTTACTATATAGATGTCATATCTATATAATTACTTTAAAGGCAGAATATTGTACATTGGCATCAAAATAACTATTTCATGTCACAATAAAGACTTGGATGTATAAGTATGGGCACATATTTATATATATAAGTTTACTTAGAGTCAAATTATTTTTTCTTAGTAATCTACTTTTCAATTTATAACAAAAATGTTGTTAAAATTCCCCATATTTATTAAAAATCACAAATGGCATACTACTGTCTATATGCTTAAAGACAAATACATTTTAAGTATTTCAAATATTCTTCAAATATATTAAACTTTTTGTTAAATTTTGTAGATGTGCAGATCACTACAATTCAATGCTATACTACTTTTTTTCCCTCCCTCAATTGGGGCAAAATTAAACTTTGTTCAGCTGCTATTGTGTGGGTGGAGGTACTGAATTATATTCAAATAAGCAGAGATCCAAAACTTCATTCTTTGGTTTAAATATACTTTCAGAACTAGTGTGGACACTAACCACTTAGGATGGCTCCTTGTCTTTTACCCTGTTGGCCATTTGTTGTTAGAAATAATAATAAAACCATTTTATTCAACAAAATATTAACCACAGCTATTGAAAAGAATCATACACACACATACATATTGATATGGGACAACCTTTAAGATACAGTTGAGTGGAGAAACAAAAGTTGAAAACATCAGATACATGATGGTTCCATTTATATTAAATAAACCAACAAGAAAAAGAGAAGGAAATATATGTGTATCTGCTTAAAAGGTATATGCTCATTATACTTTGATAATATAGAGAAAAGATTTAATGGAAGTTGCCTCTGAGAATCAAACTCAATAGGAATTAAAATCAATTTTCACAGCATAATGCTTATTCTATTATCTTAAAAATTATATTAAGCATCTAAGTAAGTGGCTTTTAACTTTGGTTACACACTAGAATCACCCAAAGAATCTTAAAAATTCTTGGTCCTGTCCTTTAGAGATTCCAATTTAACAGATGTACAGTAGAGGTGAGCATCAGTGTTTTTAAAGGATGCTCAGACAATTCTCAATCACAGTACTCATCACTACTGAGTCACACTTTATAATTACACTTATAGACTATCTAAAAATTTGTGTTCTTTTTGTTTACATTTAATGCTATTGGGTCAAGGTAAAAGTCATTTAAATTGAAAGACACATTCTTAAATGAAATATATAACTTGAAGTTTATAAGCTTAAGTAACCATTTTTTCTACCACAAAGAAAACCTAGAGCGATAGCATATTTTTAGAAATGCATGTCTGAGATAATCTGATTATACATTAACATAATTATTCACCATTAGACAAGTATTTTACTATTAGCTTTGAATCAGAATTTAAAAGAGTCCAGCTAATTATTATTTTAAAAATTCCTTCCTTGCCAGAATTGCATTGGATAAATGAGACAAATTATTATTTAGGATTATATCTTCATTTCTTTGTAG
Seq C2 exon
CTGGAATAAGCTCTGATTATAGCCTTGAAGAGATAGATGAAAAGGAAGAACTGAGTGAAATGCCTAAAGATGAGGCTGAAAATACTTCTCTGAAGTCACAAGACATTCCTACTGTATCTACTGATATAATAAATACACTGAAAAATGATCCTCACTCAGGCCCTGGCAGTGCTACTGGAGAGTCCTCACAAAACTCCAAAGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005501:ENSBTAT00000007231:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]