BtaINT0002213 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5E5D7]
Coordinates
chr26:25715287-25716217:-
Coord C1 exon
chr26:25715903-25716217
Coord A exon
chr26:25715559-25715902
Coord C2 exon
chr26:25715287-25715558
Length
344 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
ACCACAGGCCCCTCTTGCAGAGG
3' ss Score
6.3
Exon sequences
Seq C1 exon
AGTCAGTGGCCCTGAGGCTGCGAGGTGGTGCCGGGCCCTGTGCTGGGTGGTTGGACGTGTTCCACAACGGAACGTGGGGGGCCGTGTGCAGTAACGCCCTGAAGGACGCCTCCTTGTCCATCATCTGCCAGCAGCTGGGCTGTGGGGAGCGGGGCTGGCTGGAGAACAGGCCGGGGCACACTAGCCTGGGCACCTCCTGGGTGGACAACATCCAGTGCCGCCGGCTGCGGAGCTCCACGCTGTGGCAGTGCCCCTCAGCCCCCTGGCACCCGCACTCTTGCACCCGTGGAGAGGAGGTCTGGATCACCTGTGCAG
Seq A exon
GTAGGCCCTGCCACCTACTGCAGGTGGGCAGACTCTGGGGGCCCTCGAGGCAGCTTCAGTGTCCTGACAGGTCATCCACAGAGGCTGCCATTCACCCATGTCTGGGGGTGGTGGGCTCACTGGGCTCCACAGGTTCCCTTCTGAGGCTTCTCTGAGCATTTACACCTGGTGAACCGCTATTTAAATCCAACAGGATCGTCAGGGACAGCGACGCAGGATTCCGGGGAGGCCCTCAATTGCTCCTTAATGGGCAGCTGCCCAGGTACCCCTCTCCCCCCGCAACCGGCTCCCCATCCTCTCCCGTCCGGGTCCTGCCCCCCGGTGACCACAGGCCCCTCTTGCAG
Seq C2 exon
AGGAGGGCGAGCTGCGCGTGCGCGGGGGTGAGGACCGCTGCTCGGGCCGTGTGGAGCTCTGGCACGCTGGCTCCTGGGGCACCGTGTGTGATGACTCCTGGGACCTGGCGGACGCCGAGGTCGTGTGCCGGCAGCTGGGGTGCGGCCGGGCTGTGGACGCCGTGGCGGGGGCTGCCTTTGGACCAGGCTCGGGGCCCGTGTGGCTGGATGAGGTGGGGTGCCGGGGCAGCGAGGCCTCCCTGTGGGGCTGCCCGGCGCAGCCGTGGGGCCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010522:ENSBTAT00000013918:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
PF0053013=SRCR=PU(92.2=91.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCCGTGTGCAGTAAC
R:
CAGGTCCCAGGAGTCATCACA
Band lengths:
345-689
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]