GgaINT0045276 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:6871626-6872807:+
Coord C1 exon
chr7:6871626-6871940
Coord A exon
chr7:6871941-6872492
Coord C2 exon
chr7:6872493-6872807
Length
552 bp
Sequences
Splice sites
5' ss Seq
GTGGTAACT
5' ss Score
5.08
3' ss Seq
GGAAGATTCTGCATCTGCAGACA
3' ss Score
2.53
Exon sequences
Seq C1 exon
AGTTCATGGCCCTGAGGCTGGAGAACAAAGATGGCTGCTCCGGGCGCCTGCAGGTTTTCTATAACGGAACATGGGGGATTGTTTGCTCCAACTCTATGACTCCTCACACAGTGCCATTGGTGTGCAAGCAGCTGGGCTGTGGGGACAGTGGGATCCTGGAAATGAGTTCGCGCTACGATAAGCTTTCTGGCATTGCATGGCTGGATCACATCGAGTGTGGAAAGAGCAATAGCTCCTTCTGGCAGTGTCCTTCTGCACCCTGGGACCCACAGTCGTGTGATGATCTGCGAGATGAGACCAACATCACCTGCAGTG
Seq A exon
GTAACTATGAGCCATGTGGGCACCTACCTGGCACAGTCCGGCACAGAGAAAGAGCCTGGAGGGGCTTTTTCTGCCTATGTCAATCCCTCCTGCTGCTGGTGGCTAACAGGCCACTTCAGCTGAGAGAGCCACACTTGTTCACCAGCAATGCCCAGGGCAGGGAGAGGCAACTCCAGGGGAGGTCTCAGAAGTGACCAGACTGGGTATGAGGAACCTCCCCTCCTGCTGCTCTCTGATCCAGGCACTCTGTGAGGATGAGTATTCTGGGTCTTTTTGCAGAGCCATGCATGTCCTTTCAGTGACTGGGGTTCAACTGCTGGTGTGACCACAGTGAGGTGCAAGATGAGGCCAGCTCTGCTCTCTTCTGCACAACCCCCAGCCCCTTCACTACAACATTTCTTTCTGTAGGGAGACAGCCAGGAAGGCCTCTGGTGGCAGCATGCCCTAACTCCACCAGTTGCACAGGTAAGAACAGCTTCTCCACATGGCTTCTAGCCTGGCAAGGCTGTCCTGACTGTGCTGGTGCCACGTGGGAAGATTCTGCATCTGCAG
Seq C2 exon
ACAGGGAGAAGATCCGTGCTGTGGGAGGCAAGGACAGATGCTCAGGCAGAGTGGAGATCTGGCACCACGGCTCCTGGGGGACAGTGTGTGATGACTCATGGGACATGCATGATGCTGAGGTGGTGTGCCGGCAGCTGGGCTGCGGCCCTGCAGTGTCTGCCCTGGCTGAGGCTGCATTTGGGGAGGGTACAGGACTCATCTGGCTGGAGCAAGTGGAGTGCAAAGGGACGGAGCTATCACTGCAGGACTGCTGGGCCCGGCCTGGAGACAGTGGTGTCTGCCGACATAAGGAAGATGTTGGAGTGCATTGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002213:ENSGALT00000003467:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
PF0053013=SRCR=WD(100=92.5),PF081316=Defensin_3=WD(100=25.5),PF118373=DUF3357=PU(1.5=0.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACAAAGATGGCTGCTCCG
R:
CCAGATCTCCACTCTGCCTGA
Band lengths:
356-908
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]