BtaINT0002226 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr11:99487300-99489622:+
Coord C1 exon
chr11:99487300-99487426
Coord A exon
chr11:99487427-99489469
Coord C2 exon
chr11:99489470-99489622
Length
2043 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
3' ss Seq
AATTTCTCTTTCTTCTTTAGGGG
3' ss Score
10.97
Exon sequences
Seq C1 exon
GTGTATAGTTTCTTGGATAAGATGTCTTTCTACAATGAACTCTATAAGCACAAGCCCCATGATGTGATCTCCCACGAAGATGGAACCCTTTGGCGGAGGCAAACACCCAAACTCCTTTACCCTCTAG
Seq A exon
GTGAGAGAGACAGATGACCCTGACTCAGTAGCCTCTTCCACGGCGTCTGTGTTGACCTGACTGCTGTTTTAATGTTTCATGGCAGGTACCTTTAAAGTGGATCCTCTCCTCCACTGTGCTTGTTGATTTCCTGATAAATTATTGGTTTCTTACTGTTTTACATCATTTGATCGTGTTACTTCAGAAATAGTGCTTGTTCATTATAACAAAGGAGACAGCGCAGAGCTATGTTTTTAAATGTTCGAATCTTTTCAGGCCCATCCTCATCAGATGGTTACTGTTCCGTGTGGTGTATATCCTCTGACACATCTCTGTGTTCTCTCACAGGTTCTCTGCAAATCGATTTTATTACATGTAGATCTGACTCATTCTTTTTAGTAACTATATAATTATTCTTGAAGTTTCATATTTTTTTATCTTTCACCTTCTAGAGGACATTTAGGCTATGTCAGGTTTTTGCCACTACAAACAGTGCTTCTCTGGGGACATATACCTTTATGTCCTGGTGGTTTTACTTTTTAGTACATAGAATCCCTAAAGTGGGACTGCTGGGTAAAAGGGTGTATGCAATAAAATTTTTAAATACATGTCCACTGACAGATGAAATGGATTTTCTAAAATGCAGTATATATAGATAAGACACCAAGTTTTCTTAGGAGCCAAAATTTGGAGAGTATTATTCAGCCTTAAAGAGAAAAGGAATTCTGACACATGCTATGTATAACATGGGTGAACCTTGAAAACACGGTACTAAATGAAGTAGAACAGTCCGGAAAGGTTAAATACTGTAGGATTCCATGCATATGAGGTACTTAGAGTAGTTCAATTTATAGTGACAAAAAATAGAATGGTAGCTGACTGACAGGGGCTGGGGGCTGGGATAATGGAGATTACAGGTTAATGGGTACAGAATTTCAGATTTGCATGATGAAAACAGATCTTTGGGTTGATGGTAGTGAGGGTTGCATAACCATGTGAATGTACGTAATGCCACTGGCCTGGCAACTTAGAAATGGTTAAAATGGTAAATTTTATCTATTTTTTTTACCACAATTTGAGAAAAATGGTAGAAAAAAAATTTTTTTTTTAATATTCCTAAGTATTTTATTCTTTCCATTGCAATGGTGAATGGAATTGTTTCCTTAATTTCTCTTTCAGTTTTCTCATTATTAGTGTATAGGAATGCAAGGGATTTCTGTGTGTTGATTTTATATCCTGCAACTTTACTATAGTCATTGATTATTTCTAGTAATTTTCTGGTGGAATCTTTAGGGTTTTCTGTGTAGAGGATCATGTCATCTGCAAATAGTGAGAGTTTTACTTCTTCTTTTCCAATTTGGATTCCTTTTATTTCTTTTTCTGCTCTGATTGCTGTGGCCAAAACTTCCAAAACTATGTTGAATAGTAATGGTGAAAGTGGGCACCCTTGTCTTGTTCCTGACTTTAGAGGAAATGCTTTCAATTTTTCACCATTGAGGATAATGTTTGCTGTGGGTTTGTCATATATAGCTTTTATTACGTTGAGGTATGTTCCTTCTATTCCTGCTTTCTGGAGAGTTTTTATCATAAATGGATGTTGAATTTTGTCAAAGGCTTTCGATTGTGTTGAATTAAGTTGTAGGAAAACAGCAATTTCCTTTCCTGCTGGCAGCATGTGAGAGTAACCTGTTAACAGTTGTAAGCACTTGTATATTCCACATGCTCAAGGAATAAAATGTGGGAGGCACAGCCTTACTCTTCTAATCTTTGCATCGCTAGTGACTTACCTGGTGACCTGGGCACCTGCTGTCCTGTAAGGTGGTCTTCCTATAGTCATCATGTGAGTGGAGAACCACTCTGCACTCGATTGTTTTTCAGACACGTGGAAAGACTCACTTCCCCTATGACAGTTGAGAGCTTTTGTTTTTGTCCCTTTTTAATGCAAAAAGCTGTAACAGTAGTGGGTACTAAGAAGAGAGTCTGTACATCTCTGTGGGATTAGATATTGCTGTCTGTCATAGGAATCTCCTCTTCCTAGTAGACTAATTTCTCTTTCTTCTTTAG
Seq C2 exon
GGGGTCAGACCAACCTTCGCATACCTCAAGGCACCGTGGGCCAAGTGATGCTGGACGATAGGGCCTACCTGGTGCGCTGGGAATACTCGTATAGCAGCTGGACCCTCTTCACCTGCGAGATTGAGATGCTGCTGCATGTCGTTTCCACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010613:ENSBTAT00000014030:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104874=Nup188=FE(4.6=100)
A:
NA
C2:
PF104874=Nup188=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development