BtaINT0002233 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr11:99492600-99492898:+
Coord C1 exon
chr11:99492600-99492720
Coord A exon
chr11:99492721-99492831
Coord C2 exon
chr11:99492832-99492898
Length
111 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
ATGTCTTTTCTGGAGTCCAGGTT
3' ss Score
2.08
Exon sequences
Seq C1 exon
GGGCAGCTTGGTAGTACCCAGAGCCAAGGGCTGGTGCCTTGTGTCATGTTTGTGCTGAAGGAGATGCTGCCAAGTTACCACAAGTGGCGATACAACTCCCATGGTGTGAGAGAACAGATTG
Seq A exon
GTAAGGAGAACATGGGCAGCGAAGATGGGAGGCTCCCTGGCCACCTTTCTTTCTTGGGATAAGGGTCATCACCCGAGGTTACATCACTCCTATGTCTTTTCTGGAGTCCAG
Seq C2 exon
GTTGCCTGATCCTGGAGCTGATTCATTCAATACTGAACCTGTGCCATGAGACAGACCTGCATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010613:ENSBTAT00000014030:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104874=Nup188=FE(4.4=100),PF118943=DUF3414=FE(8.0=100)
A:
NA
C2:
PF104874=Nup188=FE(2.4=100),PF118943=DUF3414=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCTTGGTAGTACCCAGA
R:
TGCTATGCAGGTCTGTCTCATG
Band lengths:
186-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development