BtaINT0002239 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr11:99496655-99497400:+
Coord C1 exon
chr11:99496655-99496824
Coord A exon
chr11:99496825-99497330
Coord C2 exon
chr11:99497331-99497400
Length
506 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
GCCATGTATTTTCTTTTCAGACC
3' ss Score
9.27
Exon sequences
Seq C1 exon
GAATTCAGCCTCGGGGTGTGGAGCTGTCTCCACGCGGTGCTGGAGCTGATCGGTTCCCAGCAGCAGGACCGCTACTGGTGCCCCCCACTGCTGCACCGGGCAGCCATCGCCTTTTTGCACGCCCTGTGGCAGGACCGGCGGGACAGTGCCATGCTGGTCCTCAGAACCAA
Seq A exon
GTGAGTCTGACTCCAGAAATTCCTCAGTCTCTGGAGTGTGTGTCCTTGTCTATAAGATAAGGGGGCAGTCATTCTGGGAGGTTTGTTGTGAGAGGTCATGCTTAAAAGTGCTTCGTGCTTGGGTTATTGTGTGGGAGTTATTCTCTTTTTAAAGCTGCCCCAGCAGGTGTAATCTTTACTCTGATATGTTTACCTTAGAGTTCTACCTTTCAAATTCCCACCTTCTGCCAACCCCCAAAGCCATTGCTCATAAGAAACAGTAGTCAGATGAGGGTGACTTGCTCGAGCCATTGAACTGAATGGAACACGCTTTACTCTGGGTCCCTGTTTTGTCCATGGAACCGCTTTCTGTTTATGTATTATAGTCCGAACAGGTGACCTATGCAGCAGATGTTAGGGTTGGAACTGAGAAAATGTGGAGAGGTGACCACCAAGGGGAGGTGGAAAGAGGAGAAAAAGGACTGTATGAGAGAAAGTGTGATTTCTGCCATGTATTTTCTTTTCAG
Seq C2 exon
ACCCAAGTTTTGGGAGAATCTAACGAGTCCGCTATTTGGTACGCTTTCTCCTCCCTCGGAAACATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010613:ENSBTAT00000014030:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF118943=DUF3414=FE(11.2=100)
A:
NA
C2:
PF118943=DUF3414=FE(4.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGGGTGTGGAGCTGTC
R:
TCAGATGTTTCCGAGGGAGGA
Band lengths:
230-736
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development