BtaINT0002247 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr11:99501151-99502467:+
Coord C1 exon
chr11:99501151-99501332
Coord A exon
chr11:99501333-99502263
Coord C2 exon
chr11:99502264-99502467
Length
931 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
3' ss Seq
ATCTCTGCCCCTGGGCCCAGCAG
3' ss Score
4.4
Exon sequences
Seq C1 exon
TGAATGACATCCCCCAGTACTCCCAGCTGGTGCTGAACGTCTGTGAGACCCTTCAGGAAGAGGTGATCGCACTTTTCGACCACACCCGCCACAGCCTGGCGGCGGGCAGTGCCACCGAGGACAAGGACAGCATGGAGACCGACGACTGCTCCCGGCTCCGGCACAGGGACCAGCGGGATGGG
Seq A exon
GTGAGGGGGCGCCTGGGAATCAGTGTGTACTCCACTCGCATCCCCAGTTGTGAACTGCTGCCTCCTCTGGGCCAGGCCCAGGGGTGGCGAGTGAACAAGACAGTCACAGCCTGACAGGGAAAGTTAAGAAACCAGATCGCGCAACATGTGTCAAATTCCGTTGTGGCAAGTGTCGCAGGGGTGGAACACAGGGAGAGGGTGCCCCATGGGGTTCTCACCTCATCCAGGGATTCGGAGAGAAAGCACCCTTTCAGCAGTGCCTGGGCGTTGGTAGAGCCGGCAGGCCACGGGGGCAGGGGGATTTGGGCAGCAAGAACCGCGTGTGCTGAGCTGTGGGTGAGAATCATGTGGTGTGAGCCAGGGTCAAGTGAGGCCTGGAGAGCAGGAGGCTGGATGACCGGCAGCCTTGCCAGGGTCTTTATTCTGGGTGCTAAGTGAAACAGAAAACCACGGAAGGATTTTAAGTAAGGGAGAAAAACGATGAGATTTGTATGTTAGAAAGCCTGTTGGATGTATTAATTGTACAGAAGAGTGTTTATCAAGCTGTGGATCAGGACCTATTCATGAATCTTGGCTCATTTGGTTATAACCAGCATTTTCTAAATGAAGTAGAATAAAATATAGAAGAAAATAGCTTACTTTGCAGGGGATAAAGGTAGGTACTCTTTAAATTAAACATGTAAGTATGCATATACTGCAGCGCAGTATGGATTACTCTGGGGGGCTCATGACCATTAAGTGTGAAAAGCCACTGGGCTGAAGAACAGAGTAGAGAGGATCTGGAGAGAAGGAGGGACCATTAGGGAGGTGAGAGCGATTGTGCAGTTAGAGGGGAGCTCGCTTTGGCCCCACATGGCGTGGGCGACCTGTTCCTCTCCGCCTCCCCCGGCACCACCTCCTTCCCTCTCACCATCTCTGCCCCTGGGCCCAG
Seq C2 exon
CAGGTCTGTGTCCTGGGCCTGCACCTGGCCAAGGAGCTGTGTGAGGTGGATGAGGACGGGGACTCGTGGCTACAGGTGACCCGCCGGCTCCCCATCCTGCCGACCCTCTTCACCACCTTGGAGGTGAGCCTTCGCATGAAGCAGAACCTGCACTTCACCGAGGCGGCGCTGCACCTGCTCCTCACACTGGCCCGCACCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010613:ENSBTAT00000014030:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACATCCCCCAGTACTCCC
R:
CCTCGGTGAAGTGCAGGTTC
Band lengths:
342-1273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development