BtaINT0002248 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr11:99502264-99502708:+
Coord C1 exon
chr11:99502264-99502467
Coord A exon
chr11:99502468-99502615
Coord C2 exon
chr11:99502616-99502708
Length
148 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TGCATCTCTCTCCCTTGCAGGGG
3' ss Score
12.26
Exon sequences
Seq C1 exon
CAGGTCTGTGTCCTGGGCCTGCACCTGGCCAAGGAGCTGTGTGAGGTGGATGAGGACGGGGACTCGTGGCTACAGGTGACCCGCCGGCTCCCCATCCTGCCGACCCTCTTCACCACCTTGGAGGTGAGCCTTCGCATGAAGCAGAACCTGCACTTCACCGAGGCGGCGCTGCACCTGCTCCTCACACTGGCCCGCACCCAGCAG
Seq A exon
GTAGGCGCAGGCAGAGGAGTGGCTGGGCTTGTGCCAGTGGGTGCTGACGCGGCCCAGGGTTCTCCCAGCCCGAGAGCCCCCACCCCGCCCCGGGGCGGGCGGCTGCAGTGACAGCGTCCATCTCATCCTGCATCTCTCTCCCTTGCAG
Seq C2 exon
GGGGCCACGGCTGTGGCCGGAGCCGGCATCACCCAGAGCATTTGTTTGCCTCTCCTGAGTGTGTACCAGCTCAGCACCAACGGGACAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010613:ENSBTAT00000014030:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGCTGTGTGAGGTGGAT
R:
GTGCTGAGCTGGTACACACTC
Band lengths:
251-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development