BtaINT0002249 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr11:99502616-99503248:+
Coord C1 exon
chr11:99502616-99502708
Coord A exon
chr11:99502709-99503089
Coord C2 exon
chr11:99503090-99503248
Length
381 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GTCTGCTGTTTGTGTCTTAGACA
3' ss Score
8.97
Exon sequences
Seq C1 exon
GGGGCCACGGCTGTGGCCGGAGCCGGCATCACCCAGAGCATTTGTTTGCCTCTCCTGAGTGTGTACCAGCTCAGCACCAACGGGACAGTGCAG
Seq A exon
GTGAGTTCCAGGGGCCTGCCCTGCCTCCCCAGGCCCCTTGGTGCTGTCACTGGGCCTGGAAGTTGCTTTCTTGAGGGGCCTGGTTAAGGCACCAAGAATACAGAAGCTTCCCCACCCTTGCACTGACCGCTAGCAAGAGAAGCTCACGCAGTTAGTTAGTGCCCAGCCTGAACCTGGAGCCTTGGCTTCTTGTATCTCTGGTGCTCTTTCCGCGTAACGCCTGACCTCGGACCCTCTCTGACCTTGCTGGCGCCCCTTCCAGGAGCTTTTCTCCTCAAAAGAGCCAGGCTTCCTAGCTGCTGGGTTGCAGGGAGGCCTCAAGGTCCCTGTCAGCTGGTTCCTGGGCCCTTGTCGTGATCCTGTCTGCTGTTTGTGTCTTAG
Seq C2 exon
ACACCCGGCACCTCTCGGAAGTCCCTGGACGCCCCTTCTTGGCCTGGCGTCTACCGTCTCTCCATGTCCTTGATGGAGCGGCTCCTCAAAACCCTGCGCTACAACTTCCTGACCGAGGCCCTGGACTTCGTGGGGGTTCACCAGGAGCGGACCTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010613:ENSBTAT00000014030:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.094
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCATCACCCAGAGCATT
R:
CTGTAAGGTCCGCTCCTGGT
Band lengths:
230-611
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development