BtaINT0002252 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr11:99504286-99504688:+
Coord C1 exon
chr11:99504286-99504360
Coord A exon
chr11:99504361-99504454
Coord C2 exon
chr11:99504455-99504688
Length
94 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CTCCCCCCTGCCCCCGCCAGAAC
3' ss Score
7.98
Exon sequences
Seq C1 exon
GTGAACCTCGGCTACCTGTGCCAGGCCTGCACCTCCCTCCTGCACAGCCGCAAGATGCTGCAGCACTACTTGCAG
Seq A exon
GTAAGCCGGCCTCCGCGCGGCCCGCCCCGGGCGGCCTCGCCCCAGCTCCTCCGCACTCCAGCGCTCTGTTGTCTCTCCCCCCTGCCCCCGCCAG
Seq C2 exon
AACAAAAATGGGGAGGGCATCCCCTCAGCTGTTGCCCCCCGAGCTCAGCGGCCATCCGCAGCTGCCCTGGCTGCCCCCTCCTGCTCCTCCTCCAAGCAGCCCGCTCCTGACACGGAGGCCTCAGAGCAGCGGGCCTTGCGCACCGTCCAGTATGGCCTCTTGAGGATCCTCAGCAGGACCCTGGCCGCCCTGCGCCGCTTCACCCCCGATGTCTGCCAGGTCTTGCTGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010613:ENSBTAT00000014030:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.256
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACCTCGGCTACCTGTG
R:
CTTGGAGGAGGAGCAGGAGG
Band lengths:
171-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development