BtaINT0002255 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr11:99504795-99505229:+
Coord C1 exon
chr11:99504795-99504926
Coord A exon
chr11:99504927-99505155
Coord C2 exon
chr11:99505156-99505229
Length
229 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CCCCATTTCTCTTTCTCCAGCTG
3' ss Score
9.47
Exon sequences
Seq C1 exon
TCCCTGGACCTTGCTGAGTACAGCTTCCTGTTTGCCCTGAGCTTCACCACTCCCACTTTTGACTCCGAAGGGGCCCCCTCCTTCGGGACCCTTCTGGCCACTGTGAATGTGGCCCTGAACATGCTTGGAGAG
Seq A exon
GTAAGTTGGGTATTGTCTGACCCCTCACCCCAGGCCTTCCTCCCAGCTTTCCACCGTCTAACCACCACCTTGGGCCTGTGTACCACCTGAGCTGACCTGTAAGAACTAGTGAGTTACCGCGTAGCTGATAAAATCGCCTAGCGTAGGTCCTGTGAAATGGGGAGGTCTCAGTGGGTTGGAGTTGTTACTACTACCTCATTTTTTTTAACCCCCATTTCTCTTTCTCCAG
Seq C2 exon
CTGGACAAGAAAAAGGAGCCTCTCACCCAGGCTGTGGGGCTCAGCACACAAGCAGAAGGGACCAGAACTCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010613:ENSBTAT00000014030:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.320
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGGACCTTGCTGAGTAC
R:
CAGAGTTCTGGTCCCTTCTGC
Band lengths:
204-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development