BtaINT0002257 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr11:99505361-99506210:+
Coord C1 exon
chr11:99505361-99505490
Coord A exon
chr11:99505491-99505605
Coord C2 exon
chr11:99505606-99506210
Length
115 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGGA
5' ss Score
5
3' ss Seq
ATCAGGTGCTTCTCTTGCAGAGC
3' ss Score
7.99
Exon sequences
Seq C1 exon
GTCGCTCCTGATGTTCACCATGGAGAACTGCTTCTACCTGCTCATCTCCCAGGCGATGCGTTACCTTCGGGACCCGGCTGTGCACCCCCGGGACAAGCAGCGGATGAAGCAGGAGCTCAGCTCAGAGTTG
Seq A exon
GTAGGAGGGGTGGAGGGCCCTGCCTGCTGGGGCGACCCAGGGGTCCCAGCCCCCAAGGGCCTGGGGCCGCCCTGAGAGGGCGGCCACAGGGCCTCATCAGGTGCTTCTCTTGCAG
Seq C2 exon
AGCACTCTCCTCTCCAGCCTCTCCCGCTACTTCCGCCGGGGAGCCCCCAGCTCCCCTGCTGCTGGCGTCCTTCCCTCGCCTCAGGGCAAGTCCACCTCTCTCTCCAAGGTCAGCCCCGAGAGTCAGGAGCCTCTGATCCAGCTGGTGCAGGCCTTTGTCCGACACGTGCAAAGATAGGGCACCTGCCTGCTGCCGCCTACACTCTGCACCAGCCTGCACGGCAGGCCTGGGGAGTGAGGGGTACTGCTGGCAGACAGCCTGTCTGGGCCCGAGAGCAGCTCGTCACCCTCCCCAGAGTCGCCGTGACTCCAGCCACTGCCCCAGCGTTATTTTTGTAATAGATCAAGAGGTCAACAGCAGGGGTGGGGAGCCGTAGTCTGCTGCACTCGGGCTCACGTTCAAAATGCCCCTAAAGAGGTGTATTCCTTTCCTCAAGCATTCCCCACAGCACTTGACCCTGTCGGGGGAGAGGCGGGGAGCCAGTGTCACGTGCAGCCAGGAGGCTGTGTGCACGGGTTTGAGAAATCTGTTTTTCCACACTCTGTTCTTGCAGTTTTTGGTAATACTGTGGTCTATTTATACAAATATTAAAATACTGTTTATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010613:ENSBTAT00000014030:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.295 A=NA C2=0.362
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCCTGATGTTCACCATGG
R:
GCTGACCTTGGAGAGAGAGGT
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development